Name: Acidiphilium sp. JA12-A1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158200

Type strain:

Species: Acidiphilium sp.

Strain Designation: JA12-A1

Culture col. no.: DSM 100189

Strain history: <- M. Mühling, TU Freiberg, Inst. of Bioscience, Germany; JA12-A1 <- J. Tischler {2011}

NCBI tax ID(s): 527 (species)

SI-ID 402415

DSM 100189

Other strains from Acidiphilium sp.

A. sp. PM, DSM 24941
A. sp. JCM 20758, IAM 12820
A. sp. JCM 20759, IAM 12821

Section

Acidiphilium sp. JA12-A1 is a mesophilic bacterium that was isolated from pilot treatment plant for the biological remediation of acid mine drainage water.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acidiphilium*
	Full Scientific Name (LPSN)	Acidiphilium Harrison 1981

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64799]

Culture medium

ACIDIPHILIUM MEDIUM (DSMZ Medium 269)

[Ref.: #64799]

Culture medium growth

[Ref.: #64799]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64799]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64799]			growth	30 °C

[Ref.: #64799]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64799]	Sample type/isolated from	pilot treatment plant for the biological remediation of acid mine drainage (AMD) water
[Ref.: #64799]	Geographic location (country and/or sea, region)	Saxony, Lusatia
[Ref.: #64799]	Country	Germany
[Ref.: #64799]	Country ISO 3 Code	DEU
[Ref.: #64799]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Industrial wastewater
#Engineered	#Other	#Mine
#Engineered	#Waste	#Water treatment plant
#Condition	#Acidic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64799]	Acidiphilium sp. JA12-A1 ACIDI_244c, whole genome shotgun sequence	JFHO01000234	5291	ENA	1464546 tax ID
[Ref.: #64799]	Acidiphilium sp. JA12-A1 ACIDI_244c, whole genome shotgun sequence	NZ_JFHO01000234	5291	ENA	1464546 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidiphilium sp. JA12-A1	GCA_000724705	contig	GenBank	1464546 tax ID	*
[Ref.: #66792]	Acidiphilium sp. JA12-A1	1464546.3	wgs	PATRIC	1464546 tax ID	*
[Ref.: #66792]	Acidiphilium sp. JA12-A1	2571042905	draft	JGI IMG/M	1464546 tax ID	*

[Ref.: #64799]

GC-content

66.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidiphilium sp. JA12-A1 PATRIC: 1464546.3
[Ref.: #69480]	motile	yes	69.305	no
[Ref.: #69480]	gram-positive	no	98.283	no
[Ref.: #69480]	anaerobic	no	96.194	no
[Ref.: #69480]	halophile	no	89.155	no
[Ref.: #69480]	spore-forming	no	94.924	no
[Ref.: #69480]	thermophile	no	93.857	no
[Ref.: #69480]	glucose-util	yes	86.686	no
[Ref.: #69480]	flagellated	no	89.227	no
[Ref.: #69480]	aerobic	yes	70.759	no
[Ref.: #69480]	glucose-ferment	no	90.25	no

Availability in culture collections External links

[Ref.: #64799]

Culture collection no.

DSM 100189

[Ref.: #111029]

SI-ID 402415

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Permanent draft genome sequence of Acidiphilium sp. JA12-A1.	Ullrich SR, Poehlein A, Voget S, Hoppert M, Daniel R, Leimbach A, Tischler JS, Schlomann M, Muhling M	Stand Genomic Sci	10.1186/s40793-015-0040-y	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64799

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100189

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111029

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402415.1 )

* These data were automatically processed and therefore are not curated

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