Name: Acidiphilium sp. PM
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131572

Type strain:

Species: Acidiphilium sp.

Strain Designation: PM

Culture col. no.: DSM 24941

Strain history: <- P. San Martin-Uriz and R. Amils, Centro de Astrobiologia, Torrejon de Ardoz, Spain; PM <- M. Malki and P. San Martin-Uriz

NCBI tax ID(s): 527 (species)

SI-ID 399125

DSM 24941

Other strains from Acidiphilium sp.

A. sp. JA12-A1, DSM 100189
A. sp. JCM 20758, IAM 12820
A. sp. JCM 20759, IAM 12821

Section

Acidiphilium sp. PM is a mesophilic bacterium that was isolated from naturally acidic, metal-rich river.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acidiphilium*
	Full Scientific Name (LPSN)	Acidiphilium Harrison 1981

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22799]

Culture medium

ACIDIPHILIUM MEDIUM (DSMZ Medium 269)

[Ref.: #22799]

Culture medium growth

[Ref.: #22799]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22799]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22799]			growth	30 °C

[Ref.: #22799]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22799]	Sample type/isolated from	naturally acidic, metal-rich river
[Ref.: #22799]	Geographic location (country and/or sea, region)	Rio Tinto
[Ref.: #22799]	Country	Spain
[Ref.: #22799]	Country ISO 3 Code	ESP
[Ref.: #22799]	Continent	Europe
[Ref.: #22799]	Geographic location	37.5722°/-6.5633°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Condition	#Acidic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidiphilium sp. PM	GCA_000219295	scaffold	GenBank	1043206 tax ID	*
[Ref.: #66792]	Acidiphilium sp. PM	1043206.3	wgs	PATRIC	1043206 tax ID	*
[Ref.: #66792]	Acidiphilium sp. PM, DSM 24941	651324003	draft	JGI IMG/M	1043206 tax ID	*

[Ref.: #22799]

GC-content

68 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidiphilium sp. PM PM NCBI: GCA_000219295.2
[Ref.: #69480]	motile	yes	72.994	no
[Ref.: #69480]	flagellated	no	89.939	no
[Ref.: #69480]	gram-positive	no	97.932	no
[Ref.: #69480]	anaerobic	no	95.012	no
[Ref.: #69480]	aerobic	yes	78.951	no
[Ref.: #69480]	halophile	no	88.402	no
[Ref.: #69480]	spore-forming	no	93.671	no
[Ref.: #69480]	thermophile	no	87.272	yes
[Ref.: #69480]	glucose-util	yes	87.597	no
[Ref.: #69480]	glucose-ferment	no	90.447	no

Availability in culture collections External links

[Ref.: #22799]

Culture collection no.

DSM 24941

[Ref.: #89980]

SI-ID 399125

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Permanent draft genome sequence of Acidiphilium sp. JA12-A1.	Ullrich SR, Poehlein A, Voget S, Hoppert M, Daniel R, Leimbach A, Tischler JS, Schlomann M, Muhling M	Stand Genomic Sci	10.1186/s40793-015-0040-y	2015	*
Genetics	Draft genome sequence of the electricigen Acidiphilium sp. strain PM (DSM 24941).	San Martin-Uriz P, Gomez MJ, Arcas A, Bargiela R, Amils R	J Bacteriol	10.1128/JB.05386-11	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22799

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24941

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89980

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399125.1 )

* These data were automatically processed and therefore are not curated

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Acidiphilium sp. PM PM

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