Name: Subsaxibacter arcticus SM1214
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158202

Type strain:

Species: Subsaxibacter arcticus

Strain Designation: SM1214

Culture col. no.: DSM 107948, CCTCC AB 2014245, JCM 30334

Strain history: Y.-Z. Zhang; State Key Lab. of Microb. Technol., Shandong Univ., China; SM1214.

NCBI tax ID(s): 1541394 (species)

SI-ID 397271

DSM 107948

Special Collections

Section

When using BacDive for research please cite our paper

Subsaxibacter arcticus SM1214 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from intertidal sand.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Subsaxibacter*
	Species	**Subsaxibacter arcticus**
	Full Scientific Name (LPSN)	Subsaxibacter arcticus Xu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #65214]	Gram stain	negative

[Ref.: #65214]	Cell length	0.5-2 µm

[Ref.: #65214]	Cell width	0.2-0.4 µm

[Ref.: #65214]	Cell shape	rod-shaped

[Ref.: #65214]	Motility	no

[Ref.: #65214]	Colony size	0.5-1.5 mm
[Ref.: #65214]	Colony color	orange
[Ref.: #65214]	Colony shape	circular
[Ref.: #65214]	Cultivation medium used	TYS agar

[Ref.: #65214]	Pigment production	no
[Ref.: #65214]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64801]

Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #64801]

Culture medium growth

[Ref.: #64801]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64801]

Culture medium composition

expand / minimize

[Ref.: #65214]

Culture medium

TYS agar

[Ref.: #65214]

Culture medium growth

		Temperature
[Ref.: #64801]	growth	25 °C
[Ref.: #65214]	growth	10-30 °C
[Ref.: #65214]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #65214]			optimum	7
[Ref.: #65214]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65214]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65214]		NaCl		growth	0.5-5	%(w/v)
[Ref.: #65214]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65214]	adipate ChEBI	-	assimilation
[Ref.: #65214]	arabinose ChEBI	-	assimilation
[Ref.: #65214]	casein	+	hydrolysis
[Ref.: #65214]	citrate ChEBI	-	assimilation
[Ref.: #65214]	D-glucose ChEBI	+	assimilation
[Ref.: #65214]	decanoate ChEBI	-	assimilation
[Ref.: #65214]	dna ChEBI	-	hydrolysis
[Ref.: #65214]	elastin ChEBI	-	hydrolysis
[Ref.: #65214]	esculin ChEBI	+	hydrolysis
[Ref.: #65214]	gluconate ChEBI	-	assimilation
[Ref.: #65214]	glucose ChEBI	-	builds acid from
[Ref.: #65214]	malate ChEBI	-	assimilation
[Ref.: #65214]	maltose ChEBI	+	assimilation
[Ref.: #65214]	mannitol ChEBI	+	assimilation
[Ref.: #65214]	mannose ChEBI	+	assimilation
[Ref.: #65214]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65214]	nitrate ChEBI	-	reduction
[Ref.: #65214]	phenylacetate ChEBI	-	assimilation
[Ref.: #65214]	starch ChEBI	-	hydrolysis
[Ref.: #65214]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65214]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65214]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65214]	doxycycline ChEBI	yes	30	µg (disc)
[Ref.: #65214]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65214]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #65214]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #65214]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #65214]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #65214]	polymyxin b ChEBI				yes	300	Unit (disc)
[Ref.: #65214]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #65214]	streptomycin ChEBI				yes	10	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65214]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65214]	acid phosphatase	+	3.1.3.2
[Ref.: #65214]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65214]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65214]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65214]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65214]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65214]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65214]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65214]	beta-galactosidase	-	3.2.1.23
[Ref.: #65214]	beta-glucosidase	+	3.2.1.21
[Ref.: #65214]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65214]	catalase	+	1.11.1.6
[Ref.: #65214]	cystine arylamidase	-	3.4.11.3
[Ref.: #65214]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65214]	esterase (C 4)	+
[Ref.: #65214]	esterase Lipase (C 8)	+
[Ref.: #65214]	gelatinase	-
[Ref.: #65214]	leucine arylamidase	+	3.4.11.1
[Ref.: #65214]	lipase (C 14)	-
[Ref.: #65214]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65214]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65214]	trypsin	-	3.4.21.4
[Ref.: #65214]	urease	-	3.5.1.5
[Ref.: #65214]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65214]

Fatty acid	Percentage	ECL
C15:0 iso	16.1
C17:0 iso 3OH	12.2
C15:1 iso G	11.2
C15:0	8.8
C16:1ω7c and/or C15:0 Iso 2OH	6.9
C15:0 anteiso	6.8
C17:0 2OH	6.6
C17:1 iso ω9c	4.5
C16:0 iso 3OH	3.1
C15:0 iso 3OH	3.1
Unknown ECL 13.565	2.2	14
C17:1ω6c	2.2
C15:1ω6c	2
C17:1 anteiso ω9c	1.8
C15:0 2OH	1.7
C16:0	1.6
C17:1ω8c	1.4
C15:1 anteiso A	1.1
C16:0 iso	0.9
C18:1ω9c	0.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64801]	Sample type/isolated from	intertidal sand
[Ref.: #64801]	Geographic location (country and/or sea, region)	Kongsfjorden, Svalbard
[Ref.: #64801]	Country	Norway
[Ref.: #64801]	Country ISO 3 Code	NOR
[Ref.: #64801]	Continent	Europe

[Ref.: #65214]	Sample type/isolated from	Arctic intertidal sand
[Ref.: #65214]	Geographic location (country and/or sea, region)	coastal area of Kongsfjorden
[Ref.: #65214]	Country	Norway
[Ref.: #65214]	Country ISO 3 Code	NOR
[Ref.: #65214]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Arctic intertidal sand collected from Kongsfjorden
[Ref.: #67770]	Geographic location (country and/or sea, region)	Svalbard
[Ref.: #67770]	Country	Norway
[Ref.: #67770]	Country ISO 3 Code	NOR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Climate	#Cold	#Polar
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM091933 (>99% sequence identity) for Subsaxibacter arcticus subclade from Microbeatlas

Aquatic Samples	118
Soil Samples	95
Animal Samples	20
Plant Samples
Total Samples	233

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64801]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64801]	Subsaxibacter arcticus 16S ribosomal RNA gene, partial sequence	KM091933	1479	GenBank ENA	1541394 tax ID

[Ref.: #67770]

GC-content

35.4 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #64801]

Culture collection no.

DSM 107948, CCTCC AB 2014245, JCM 30334

[Ref.: #111031]

SI-ID 397271

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Subsaxibacter sediminis sp. nov., isolated from Arctic glacial sediment and emended description of the genus Subsaxibacter.	Sharma A, Jani K, Feng GD, Karodi P, Vemuluri VR, Zhu HH, Shivaji S, Thite V, Kajale S, Rahi P, Shouche Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002729	2018	*
Phylogeny	Subsaxibacter arcticus sp. nov., isolated from Arctic intertidal sand.	Xu F, Zhang XY, Liu C, Shi M, Su HN, Qin QL, Chen XL, Zhang YZ, Song XY	Int J Syst Evol Microbiol	10.1099/ijsem.0.000684	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64801

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107948

#65214

Fei Xu, Xi-Ying Zhang, Chang Liu, Mei Shi, Hai-Nan Su, Qi-Long Qin, Xiu-Lan Chen, Yu-Zhong Zhang, Xiao-Yan Song: Subsaxibacter arcticus sp. nov., isolated from Arctic intertidal sand. IJSEM 66: 132 - 136 2016 ( DOI 10.1099/ijsem.0.000684 , PubMed 26474960 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111031

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397271.1 )

* These data were automatically processed and therefore are not curated

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