Name: Perspicuibacter marinus 2-9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158176

Type strain:

Species: Perspicuibacter marinus

Strain Designation: 2-9

Culture col. no.: DSM 107611, KCTC 42196, NBRC 110144

Strain history: <- NBRC <- M. Teramoto, Oceanography Section, Kochi University, Kochi, Japan; 2-9

NCBI tax ID(s): 1459949 (species)

SI-ID 396593

DSM 107611

Special Collections

DSMZ
KCTC

Section

Perspicuibacter marinus 2-9 is a mesophilic bacterium that was isolated from seawater.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Arenicellales*
	Family	*Arenicellaceae*
	Genus	*Perspicuibacter*
	Species	**Perspicuibacter marinus**
	Full Scientific Name (LPSN)	Perspicuibacter marinus Teramoto et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64769]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64769]

Culture medium growth

[Ref.: #64769]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64769]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64769]			growth	25 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64769]	Sample type/isolated from	seawater
[Ref.: #64769]	Geographic location (country and/or sea, region)	Muroto, Kochi
[Ref.: #64769]	Country	Japan
[Ref.: #64769]	Country ISO 3 Code	JPN
[Ref.: #64769]	Continent	Asia
[Ref.: #64769]	Geographic location	33.3000°/134.1830°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB908276 (>99% sequence identity) for Perspicuibacter marinus subclade from Microbeatlas

Aquatic Samples	388
Soil Samples	13
Animal Samples	10
Plant Samples
Total Samples	411

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64769]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64769]	Perspicuibacter marinus gene for 16S ribosomal RNA, partial sequence	AB908276	1365	GenBank ENA	1459949 tax ID

Availability in culture collections External links

[Ref.: #64769]

Culture collection no.

DSM 107611, KCTC 42196, NBRC 110144

[Ref.: #111007]

SI-ID 396593

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Perspicuibacter marinus gen. nov., sp. nov., a semi-transparent bacterium isolated from surface seawater, and description of Arenicellaceae fam. nov. and Arenicellales ord. nov.	Teramoto M, Yagyu KI, Nishijima M	Int J Syst Evol Microbiol	10.1099/ijs.0.064683-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64769

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107611

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111007

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396593.1 )

* These data were automatically processed and therefore are not curated

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