Catenisphaera adipataccumulans (DSM 25799, NBRC 108915, GK12)

Name: Catenisphaera adipataccumulans (DSM 25799, NBRC 108915, GK12)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158177

Type strain

Strain Designation GK12

Culture col. no. DSM 25799 NBRC 108915 GK12

NCBI tax ID(s) 700500

Special Collections DSMZ

History <- Taiki Katayama, Manabu Kanno, Natl. Inst. Advanced Industrial Sci. and Technol., Tsukuba, Japan; GK12

Links

Catenisphaera adipataccumulans GK12 is a bacterium that was isolated from anaerobic methanogenic digester fed with food waste.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398012

NBRC 108915,DSM 25799

@ref 20215

Last LPSN update 2026-02-09 11:38:15

Domain Bacteria

Phylum Bacillota

Class Erysipelotrichia

Order Erysipelotrichales

Family Erysipelotrichaceae

Genus Catenisphaera

Species Catenisphaera adipataccumulans

Full scientific name Catenisphaera adipataccumulans Kanno et al. 2015

Morphology

Cell morphology

@ref	Motility	Confidence
125438		92.667

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64770	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
64770	positive	growth	37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Domestic waste
#Engineered	#Waste	#Sewage sludge

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
64770	anaerobic methanogenic digester fed with food waste	Hokkaido Prefecture, Hukagawa	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64770	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420275v1 assembly for Catenisphaera adipataccumulans DSM 25799	scaffold	GCA_014202755	700500.3	2861598655	700500	70.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64770	Catenisphaera adipataccumulans gene for 16S rRNA, partial sequence	AB537978	1419		700500

GC content

@ref	GC-content (mol%)	Method
64770	47.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Catenisphaera adipataccumulans DSM 25799
NCBI: GCA_014202755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	64.30	no
125439	motility	BacteriaNetⓘ	yes	66.90	no
125439	gram_stain	BacteriaNetⓘ	variable	84.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	88.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Catenisphaera adipataccumulans DSM 25799
NCBI: GCA_014202755.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.33	no
125438	anaerobic	anaerobicⓘ	yes	79.69	no
125438	aerobic	aerobicⓘ	no	95.39	no
125438	spore-forming	spore-formingⓘ	no	77.37	no
125438	thermophilic	thermophileⓘ	no	91.61	no
125438	flagellated	motile2+ⓘ	no	92.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catenisphaera adipataccumulans gen. nov., sp. nov., a member of the family Erysipelotrichaceae isolated from an anaerobic digester.	Kanno M, Katayama T, Morita N, Tamaki H, Hanada S, Kamagata Y	Int J Syst Evol Microbiol	10.1099/ijs.0.000021	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64770	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25799
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Catenisphaera adipataccumulans (DSM 25799, NBRC 108915, GK12)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014202755

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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