Strain identifier

BacDive ID: 158176

Type strain: No

Species: Perspicuibacter marinus

Strain Designation: 2-9

Strain history: <- NBRC <- M. Teramoto, Oceanography Section, Kochi University, Kochi, Japan; 2-9

NCBI tax ID(s): 1459949 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 64769

BacDive-ID: 158176

DSM-Number: 107611

keywords: 16S sequence, Bacteria, mesophilic

description: Perspicuibacter marinus 2-9 is a mesophilic bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1459949
  • Matching level: species

strain history

  • @ref: 64769
  • history: <- NBRC <- M. Teramoto, Oceanography Section, Kochi University, Kochi, Japan; 2-9

doi: 10.13145/bacdive158176.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Arenicellales
  • family: Arenicellaceae
  • genus: Perspicuibacter
  • species: Perspicuibacter marinus
  • full scientific name: Perspicuibacter marinus Teramoto et al. 2015

@ref: 64769

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Arenicellales

family: Arenicellaceae

genus: Perspicuibacter

species: Perspicuibacter marinus

full scientific name: Perspicuibacter marinus Teramoto et al. 2015

strain designation: 2-9

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64769
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 64769
  • growth: positive
  • type: growth
  • temperature: 25

Isolation, sampling and environmental information

isolation

  • @ref: 64769
  • sample type: seawater
  • geographic location: Muroto, Kochi
  • country: Japan
  • origin.country: JPN
  • continent: Asia
  • latitude: 33.3
  • longitude: 134.183

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_14457.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1076;96_7445;97_8936;98_10956;99_14457&stattab=map
  • Last taxonomy: Perspicuibacter marinus subclade
  • 16S sequence: AB908276
  • Sequence Identity:
  • Total samples: 411
  • soil counts: 13
  • aquatic counts: 388
  • animal counts: 10

Safety information

risk assessment

  • @ref: 64769
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64769
  • description: Perspicuibacter marinus gene for 16S ribosomal RNA, partial sequence
  • accession: AB908276
  • length: 1365
  • database: nuccore
  • NCBI tax ID: 1459949

External links

@ref: 64769

culture collection no.: DSM 107611, KCTC 42196, NBRC 110144

straininfo link

  • @ref: 111007
  • straininfo: 396593

literature

  • topic: Phylogeny
  • Pubmed-ID: 25355707
  • title: Perspicuibacter marinus gen. nov., sp. nov., a semi-transparent bacterium isolated from surface seawater, and description of Arenicellaceae fam. nov. and Arenicellales ord. nov.
  • authors: Teramoto M, Yagyu KI, Nishijima M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.064683-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64769Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107611Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107611)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111007Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396593.1