Strain identifier
BacDive ID: 158176
Type strain:
Species: Perspicuibacter marinus
Strain Designation: 2-9
Strain history: <- NBRC <- M. Teramoto, Oceanography Section, Kochi University, Kochi, Japan; 2-9
NCBI tax ID(s): 1459949 (species)
General
@ref: 64769
BacDive-ID: 158176
DSM-Number: 107611
keywords: 16S sequence, Bacteria, mesophilic
description: Perspicuibacter marinus 2-9 is a mesophilic bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1459949
- Matching level: species
strain history
- @ref: 64769
- history: <- NBRC <- M. Teramoto, Oceanography Section, Kochi University, Kochi, Japan; 2-9
doi: 10.13145/bacdive158176.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Arenicellales
- family: Arenicellaceae
- genus: Perspicuibacter
- species: Perspicuibacter marinus
- full scientific name: Perspicuibacter marinus Teramoto et al. 2015
@ref: 64769
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Arenicellales
family: Arenicellaceae
genus: Perspicuibacter
species: Perspicuibacter marinus
full scientific name: Perspicuibacter marinus Teramoto et al. 2015
strain designation: 2-9
type strain: no
Culture and growth conditions
culture medium
- @ref: 64769
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 64769
- growth: positive
- type: growth
- temperature: 25
Isolation, sampling and environmental information
isolation
- @ref: 64769
- sample type: seawater
- geographic location: Muroto, Kochi
- country: Japan
- origin.country: JPN
- continent: Asia
- latitude: 33.3
- longitude: 134.183
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_14457.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1076;96_7445;97_8936;98_10956;99_14457&stattab=map
- Last taxonomy: Perspicuibacter marinus subclade
- 16S sequence: AB908276
- Sequence Identity:
- Total samples: 411
- soil counts: 13
- aquatic counts: 388
- animal counts: 10
Safety information
risk assessment
- @ref: 64769
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64769
- description: Perspicuibacter marinus gene for 16S ribosomal RNA, partial sequence
- accession: AB908276
- length: 1365
- database: nuccore
- NCBI tax ID: 1459949
External links
@ref: 64769
culture collection no.: DSM 107611, KCTC 42196, NBRC 110144
straininfo link
- @ref: 111007
- straininfo: 396593
literature
- topic: Phylogeny
- Pubmed-ID: 25355707
- title: Perspicuibacter marinus gen. nov., sp. nov., a semi-transparent bacterium isolated from surface seawater, and description of Arenicellaceae fam. nov. and Arenicellales ord. nov.
- authors: Teramoto M, Yagyu KI, Nishijima M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.064683-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
64769 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107611 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107611) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
111007 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396593.1 |