Name: Aromatoleum aromaticum pCyN1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158118

Type strain:

Species: Aromatoleum aromaticum

Strain Designation: pCyN1

Culture col. no.: DSM 19016, LMG 31004

Strain history: <- R. Rabus, Univ. Oldenburg; pCyN1 <- G. Harms

NCBI tax ID(s): 551760 (species)

SI-ID 399015

DSM 19016

Special Collections

DSMZ

Other strains from Aromatoleum aromaticum

Section

Aromatoleum aromaticum pCyN1 is a Gram-negative bacterium that was isolated from water of ditches and River Weser.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Zoogloeaceae*
	Genus	*Aromatoleum*
	Species	**Aromatoleum aromaticum**
	Full Scientific Name (LPSN)	Aromatoleum aromaticum Rabus et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64697]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #64697]

Culture medium growth

[Ref.: #64697]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64697]

Culture medium composition

expand / minimize

[Ref.: #64697]

Culture medium

AROMATOLEUM MEDIUM (DSMZ Medium 1712)

[Ref.: #64697]

Culture medium growth

[Ref.: #64697]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64697]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64697]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64697]	Sample type/isolated from	water of ditches and River Weser
[Ref.: #64697]	Geographic location (country and/or sea, region)	Bremen
[Ref.: #64697]	Country	Germany
[Ref.: #64697]	Country ISO 3 Code	DEU
[Ref.: #64697]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aromatoleum aromaticum pCyN1	GCA_012910915	contig	GenBank ENA	551760 tax ID	*
[Ref.: #66792]	Aromatoleum aromaticum pCyN1	2887535952	draft	JGI IMG/M	551760 tax ID	*
[Ref.: #66792]	Aromatoleum aromaticum pCyN1	GCA_023704195	complete	GenBank ENA	551760 tax ID	*

[Ref.: #64697]

GC-content

61.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aromatoleum aromaticum pCyN1 NCBI: GCA_023704195.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	77.138	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	55.836	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.649	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.588	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.765	no

Availability in culture collections External links

[Ref.: #64697]

Culture collection no.

DSM 19016, LMG 31004

[Ref.: #110955]

SI-ID 399015

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aromatoleum gen. nov., a novel genus accommodating the phylogenetic lineage including Azoarcus evansii and related species, and proposal of Aromatoleum aromaticum sp. nov., Aromatoleum petrolei sp. nov., Aromatoleum bremense sp. nov., Aromatoleum toluolicum sp. nov. and Aromatoleum diolicum sp. nov.	Rabus R, Wohlbrand L, Thies D, Meyer M, Reinhold-Hurek B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003244	2019	*
Metabolism	Stereochemical Insights into the Anaerobic Degradation of 4-Isopropylbenzoyl-CoA in the Denitrifying Bacterium Strain pCyN1.	Kuppers J, Becker P, Jarling R, Dorries M, Cakic N, Schmidtmann M, Christoffers J, Rabus R, Wilkes H	Chemistry	10.1002/chem.201805837	2019	*
Metabolism	Anaerobic activation of p-cymene in denitrifying betaproteobacteria: methyl group hydroxylation versus addition to fumarate.	Strijkstra A, Trautwein K, Jarling R, Wohlbrand L, Dorries M, Reinhardt R, Drozdowska M, Golding BT, Wilkes H, Rabus R	Appl Environ Microbiol	10.1128/AEM.02385-14	2014	*
Metabolism	Complex and flexible catabolism in Aromatoleum aromaticum pCyN1.	Becker P, Dohmann A, Wohlbrand L, Thies D, Hinrichs C, Buschen R, Wunsch D, Neumann-Schaal M, Schomburg D, Winklhofer M, Reinhardt R, Rabus R	Environ Microbiol	10.1111/1462-2920.16074	2022	*
Metabolism	Anaerobic Degradation of p-Alkylated Benzoates and Toluenes.	Rabus R, Boll M, Golding B, Wilkes H	J Mol Microbiol Biotechnol	10.1159/000441144	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64697

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19016

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#110955

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399015.1 )

* These data were automatically processed and therefore are not curated

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