Aromatoleum bremense (DSM 19017, LMG 31005, PbN1)

Name: Aromatoleum bremense (DSM 19017, LMG 31005, PbN1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158117

Type strain

Strain Designation PbN1

Culture col. no. DSM 19017 LMG 31005 PbN1

NCBI tax ID(s) 76115

Special Collections DSMZ

Links

Aromatoleum bremense PbN1 is a mesophilic prokaryote that was isolated from water of River Weser and ditches.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 407085

LMG 31005,DSM 19017

@ref 20215

Last LPSN update 2025-12-16 10:07:57

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Zoogloeaceae

Genus Aromatoleum

Species Aromatoleum bremense

Full scientific name Aromatoleum bremense Rabus et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.2
125438	negative	98.485

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64696	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
64696	AROMATOLEUM MEDIUM (DSMZ Medium 1712)		Medium recipe at MediaDive	Name: AROMATOLEUM MEDIUM (DSMZ Medium 1712) Composition: NaHCO3 3.53684 g/l Na2HPO4-NaH2PO4 buffer 1.91579 g/l Ascorbic acid 0.741053 g/l NaNO3 0.631579 g/l Sodiumbenzoate 0.606316 g/l KH2PO4 0.526316 g/l MgSO4 x 7 H2O 0.526316 g/l NH4Cl 0.315789 g/l CaCl2 x 2 H2O 0.105263 g/l Na2-EDTA 0.00547368 g/l FeSO4 x 7 H2O 0.00221053 g/l 2-Mercaptoethanesulfonic acid 0.000263158 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxal hydrochloride 0.000157895 g/l ZnSO4 x 7 H2O 0.000151579 g/l MnCl2 x 4 H2O 0.000105263 g/l Nicotinic acid 0.000105263 g/l Cyanocobalamine 5.26316e-05 g/l Calcium D-(+)-pantothenate 5.26316e-05 g/l 4-Aminobenzoic Acid 4.21053e-05 g/l Folic acid 4.21053e-05 g/l Na2MoO4 x 2 H2O 3.78947e-05 g/l H3BO3 3.15789e-05 g/l CuSO4 x 5 H2O 3.05263e-05 g/l NiCl2 x 6 H2O 2.52632e-05 g/l DL-alpha-lipoic acid 1.57895e-05 g/l D-(+)-biotin 1.05263e-05 g/l Double distilled water Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64696	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
64696	water of River Weser and ditches	Bremen	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1789436v1 assembly for Aromatoleum bremense PbN1	complete	GCA_017894365	76115.4	8049220486	76115	97.99
66792	ASM1291092v1 assembly for Aromatoleum bremense PbN1	contig	GCA_012910925	76115.3	2887384675	76115	38.85

GC content

64696

GC-content (mol%)66.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aromatoleum bremense PbN1
NCBI: GCA_017894365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.60	no
125439	motility	BacteriaNetⓘ	yes	69.00	no
125439	gram_stain	BacteriaNetⓘ	negative	95.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	82.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aromatoleum bremense PbN1
NCBI: GCA_017894365.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	no
125438	anaerobic	anaerobicⓘ	no	75.59	no
125438	aerobic	aerobicⓘ	yes	56.56	no
125438	spore-forming	spore-formingⓘ	no	86.85	no
125438	thermophilic	thermophileⓘ	no	95.40	yes
125438	flagellated	motile2+ⓘ	yes	80.14	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aromatoleum gen. nov., a novel genus accommodating the phylogenetic lineage including Azoarcus evansii and related species, and proposal of Aromatoleum aromaticum sp. nov., Aromatoleum petrolei sp. nov., Aromatoleum bremense sp. nov., Aromatoleum toluolicum sp. nov. and Aromatoleum diolicum sp. nov.	Rabus R, Wohlbrand L, Thies D, Meyer M, Reinhold-Hurek B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003244	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64696	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19017
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aromatoleum bremense (DSM 19017, LMG 31005, PbN1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017894365

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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