Name: Aromatoleum bremense PbN1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158117

Type strain:

Species: Aromatoleum bremense

Strain Designation: PbN1

Culture col. no.: DSM 19017, LMG 31005

Strain history: <- R. Rabus, Univ. Oldenburg; PbN1 <- F. Widdel

NCBI tax ID(s): 76115 (species)

SI-ID 407085

DSM 19017

Section

Aromatoleum bremense PbN1 is a mesophilic, motile bacterium that was isolated from water of River Weser and ditches.

motile
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Zoogloeaceae*
	Genus	*Aromatoleum*
	Species	**Aromatoleum bremense**
	Full Scientific Name (LPSN)	Aromatoleum bremense Rabus et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %99.326

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64696]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #64696]

Culture medium growth

[Ref.: #64696]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64696]

Culture medium composition

expand / minimize

[Ref.: #64696]

Culture medium

AROMATOLEUM MEDIUM (DSMZ Medium 1712)

[Ref.: #64696]

Culture medium growth

[Ref.: #64696]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64696]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64696]			growth	28 °C

[Ref.: #64696]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992
[Ref.: #69481]	Ability of spore formation	no Confidence in %96

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64696]	Sample type/isolated from	water of River Weser and ditches
[Ref.: #64696]	Geographic location (country and/or sea, region)	Bremen
[Ref.: #64696]	Country	Germany
[Ref.: #64696]	Country ISO 3 Code	DEU
[Ref.: #64696]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aromatoleum bremense PbN1	GCA_017894365	complete	GenBank	76115 tax ID	*
[Ref.: #66792]	Aromatoleum bremense PbN1	GCA_012910925	contig	GenBank	76115 tax ID	*
[Ref.: #66792]	Aromatoleum bremense PbN1	2887384675	draft	JGI IMG/M	76115 tax ID	*

[Ref.: #64696]

GC-content

66.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aromatoleum bremense PbN1 NCBI: GCA_017894365.1
[Ref.: #69481]	spore-forming	no	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aromatoleum bremense PbN1 NCBI: GCA_017894365.1
[Ref.: #69480]	motile	yes	87.528	no
[Ref.: #69480]	flagellated	yes	66.454	no
[Ref.: #69480]	gram-positive	no	99.126	no
[Ref.: #69480]	anaerobic	no	86.885	no
[Ref.: #69480]	aerobic	no	74.864	no
[Ref.: #69480]	halophile	no	93.978	no
[Ref.: #69480]	spore-forming	no	94.235	no
[Ref.: #69480]	thermophile	no	94.575	yes
[Ref.: #69480]	glucose-util	no	73.677	no
[Ref.: #69480]	glucose-ferment	no	88.303	no

Availability in culture collections External links

[Ref.: #64696]

Culture collection no.

DSM 19017, LMG 31005

[Ref.: #110954]

SI-ID 407085

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aromatoleum gen. nov., a novel genus accommodating the phylogenetic lineage including Azoarcus evansii and related species, and proposal of Aromatoleum aromaticum sp. nov., Aromatoleum petrolei sp. nov., Aromatoleum bremense sp. nov., Aromatoleum toluolicum sp. nov. and Aromatoleum diolicum sp. nov.	Rabus R, Wohlbrand L, Thies D, Meyer M, Reinhold-Hurek B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003244	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64696

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19017

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#110954

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407085.1 )

* These data were automatically processed and therefore are not curated

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