Aromatoleum aromaticum (DSM 19018, LMG 30748, EbN1)

Name: Aromatoleum aromaticum (DSM 19018, LMG 30748, EbN1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158119

Type strain

Strain Designation EbN1

Culture col. no. DSM 19018 LMG 30748 EbN1

NCBI tax ID(s) 551760

Special Collections DSMZ

Links

Aromatoleum aromaticum EbN1 is a mesophilic prokaryote that was isolated from water of River Weser and ditches.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 396746

LMG 30748,DSM 19018

@ref 20215

Last LPSN update 2025-12-16 10:07:57

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Zoogloeaceae

Genus Aromatoleum

Species Aromatoleum aromaticum

Full scientific name Aromatoleum aromaticum Rabus et al. 2019

BacDive ID	Other strains from **Aromatoleum aromaticum** (1)	Type strain
158118	A. aromaticum pCyN1, DSM 19016, LMG 31004

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98
125439	negative	91.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64698	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
64698	AROMATOLEUM MEDIUM (DSMZ Medium 1712)		Medium recipe at MediaDive	Name: AROMATOLEUM MEDIUM (DSMZ Medium 1712) Composition: NaHCO3 3.53684 g/l Na2HPO4-NaH2PO4 buffer 1.91579 g/l Ascorbic acid 0.741053 g/l NaNO3 0.631579 g/l Sodiumbenzoate 0.606316 g/l KH2PO4 0.526316 g/l MgSO4 x 7 H2O 0.526316 g/l NH4Cl 0.315789 g/l CaCl2 x 2 H2O 0.105263 g/l Na2-EDTA 0.00547368 g/l FeSO4 x 7 H2O 0.00221053 g/l 2-Mercaptoethanesulfonic acid 0.000263158 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxal hydrochloride 0.000157895 g/l ZnSO4 x 7 H2O 0.000151579 g/l MnCl2 x 4 H2O 0.000105263 g/l Nicotinic acid 0.000105263 g/l Cyanocobalamine 5.26316e-05 g/l Calcium D-(+)-pantothenate 5.26316e-05 g/l 4-Aminobenzoic Acid 4.21053e-05 g/l Folic acid 4.21053e-05 g/l Na2MoO4 x 2 H2O 3.78947e-05 g/l H3BO3 3.15789e-05 g/l CuSO4 x 5 H2O 3.05263e-05 g/l NiCl2 x 6 H2O 2.52632e-05 g/l DL-alpha-lipoic acid 1.57895e-05 g/l D-(+)-biotin 1.05263e-05 g/l Double distilled water Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64698	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.1

Spore formation

@ref	Spore formation	Confidence
125439		96.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
64698	water of River Weser and ditches	Bremen	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2596v1 assembly for Aromatoleum aromaticum EbN1	complete	GCA_000025965	76114.8	637000012	76114	98.81

GC content

64698

GC-content (mol%)65.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aromatoleum aromaticum EbN1
NCBI: GCA_000025965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.30	no
125439	motility	BacteriaNetⓘ	yes	70.90	no
125439	gram_stain	BacteriaNetⓘ	negative	91.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aromatoleum aromaticum EbN1 EbN1
NCBI: GCA_000025965.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	79.21	no
125438	aerobic	aerobicⓘ	yes	59.04	no
125438	spore-forming	spore-formingⓘ	no	87.85	no
125438	thermophilic	thermophileⓘ	no	94.13	no
125438	flagellated	motile2+ⓘ	yes	78.54	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aromatoleum gen. nov., a novel genus accommodating the phylogenetic lineage including Azoarcus evansii and related species, and proposal of Aromatoleum aromaticum sp. nov., Aromatoleum petrolei sp. nov., Aromatoleum bremense sp. nov., Aromatoleum toluolicum sp. nov. and Aromatoleum diolicum sp. nov.	Rabus R, Wohlbrand L, Thies D, Meyer M, Reinhold-Hurek B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003244	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64698	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19018
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aromatoleum aromaticum (DSM 19018, LMG 30748, EbN1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000025965

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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