Name: Aromatoleum aromaticum EbN1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158119

Type strain:

Species: Aromatoleum aromaticum

Strain Designation: EbN1

Culture col. no.: DSM 19018, LMG 30748

Strain history: <- R. Rabus, Univ. Oldenburg; EbN1

NCBI tax ID(s): 551760 (species)

SI-ID 396746

DSM 19018

Special Collections

DSMZ

Other strains from Aromatoleum aromaticum

Section

Aromatoleum aromaticum EbN1 is a Gram-negative bacterium that was isolated from water of River Weser and ditches.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Zoogloeaceae*
	Genus	*Aromatoleum*
	Species	**Aromatoleum aromaticum**
	Full Scientific Name (LPSN)	Aromatoleum aromaticum Rabus et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64698]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #64698]

Culture medium growth

[Ref.: #64698]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64698]

Culture medium composition

expand / minimize

[Ref.: #64698]

Culture medium

AROMATOLEUM MEDIUM (DSMZ Medium 1712)

[Ref.: #64698]

Culture medium growth

[Ref.: #64698]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64698]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64698]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64698]	Sample type/isolated from	water of River Weser and ditches
[Ref.: #64698]	Geographic location (country and/or sea, region)	Bremen
[Ref.: #64698]	Country	Germany
[Ref.: #64698]	Country ISO 3 Code	DEU
[Ref.: #64698]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aromatoleum aromaticum EbN1	GCA_000025965	complete	GenBank ENA	76114 tax ID	*
[Ref.: #66792]	Aromatoleum aromaticum EbN1	76114.25	plasmid	PATRIC	76114 tax ID	*
[Ref.: #66792]	Aromatoleum aromaticum EbN1	76114.24	plasmid	PATRIC	76114 tax ID	*
[Ref.: #66792]	Aromatoleum aromaticum EbN1	76114.8	complete	PATRIC	76114 tax ID	*
[Ref.: #66792]	Aromatoleum aromaticum EbN1	637000012	complete	JGI IMG/M	76114 tax ID	*

[Ref.: #64698]

GC-content

65.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aromatoleum aromaticum EbN1 EbN1 NCBI: GCA_000025965.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	79.214	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	59.037	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.849	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.128	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.537	no

Availability in culture collections External links

[Ref.: #64698]

Culture collection no.

DSM 19018, LMG 30748

[Ref.: #110956]

SI-ID 396746

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aromatoleum gen. nov., a novel genus accommodating the phylogenetic lineage including Azoarcus evansii and related species, and proposal of Aromatoleum aromaticum sp. nov., Aromatoleum petrolei sp. nov., Aromatoleum bremense sp. nov., Aromatoleum toluolicum sp. nov. and Aromatoleum diolicum sp. nov.	Rabus R, Wohlbrand L, Thies D, Meyer M, Reinhold-Hurek B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003244	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64698

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19018

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#110956

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396746.1 )

* These data were automatically processed and therefore are not curated

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Aromatoleum aromaticum EbN1 EbN1

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