Streptomyces somaliensis DSM 40738 is a mesophilic prokaryote that was isolated from mycetoma on foot of 20-year old male.
mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces somaliensis |
| Full scientific name Streptomyces somaliensis (Brumpt 1906) Waksman and Henrici 1948 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9741 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 9741 | SPORULATION-AGAR (SA) (DSMZ Medium 555) | Medium recipe at MediaDive | Name: SPORULATION-AGAR (SA) (DSMZ Medium 555) Composition: Agar 15.0 g/l Glucose 10.0 g/l Tryptone peptone 2.0 g/l Beef extract 1.0 g/l Yeast extract 1.0 g/l FeSO4 Distilled water |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Disease | - | |
| #Infection | #Patient | - | |
| #Host Body-Site | #Limb | #Foot | |
| #Host | #Human | #Male |
Global distribution of 16S sequence AJ007403 (>99% sequence identity) for Streptomyces from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | Ssomaliensis1 assembly for Streptomyces somaliensis DSM 40738 | contig | 1134445 | 30.08 | ||||
| 66792 | ASM2434928v1 assembly for Streptomyces somaliensis DSM 40738 | scaffold | 1134445 | 1.14 | ||||
| 67770 | ASM1239611v1 assembly for Streptomyces somaliensis DSM 40738 | contig | 1134445 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 74.1 | genome sequence analysis |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 97.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.70 | no |
| 125439 | motility | BacteriaNetⓘ | no | 86.50 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 94.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 90.14 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.21 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 82.63 | no |
| 125438 | aerobic | aerobicⓘ | yes | 90.01 | no |
| 125438 | thermophilic | thermophileⓘ | no | 89.93 | no |
| 125438 | flagellated | motile2+ⓘ | no | 91.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Characterization and Bioactive Metabolite Profiling of Streptomyces sp. Y009: A Mangrove-Derived Actinomycetia with Anticancer and Antioxidant Potential. | Yu B, Zeng W, Zhou Y, Li N, Liang Z. | Microorganisms | 10.3390/microorganisms12112300 | 2024 | ||
| Genetics | The Genome Analysis of the Human Lung-Associated Streptomyces sp. TR1341 Revealed the Presence of Beneficial Genes for Opportunistic Colonization of Human Tissues. | Lara AC, Corretto E, Kotrbova L, Lorenc F, Petrickova K, Grabic R, Chronakova A. | Microorganisms | 10.3390/microorganisms9081547 | 2021 | |
| Discovery and Biosynthesis of Nyuzenamides D and E by Genome Mining in Streptomyces hygroscopicus. | Lum KY, Kumar R, Yang Z, Souza LDO, Jarmusch SA, Moreira JMA, Morth JP, Ding L. | ACS Omega | 10.1021/acsomega.5c03067 | 2025 | ||
| Streptomyces albireticuli lung infection managed as a pulmonary air cyst: a case report and literature review. | Liu J, Xu Z, Bai Y, Feng J, Xu L, Li F. | Front Cell Infect Microbiol | 10.3389/fcimb.2023.1296491 | 2023 | ||
| Genetics | Genome mining reveals the origin of a bald phenotype and a cryptic nucleocidin gene cluster in Streptomyces asterosporus DSM 41452. | Zhang S, Klementz D, Zhu J, Makitrynskyy R, Ola Pasternak AR, Gunther S, Zechel DL, Bechthold A. | J Biotechnol | 10.1016/j.jbiotec.2018.12.016 | 2019 | |
| Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities. | Watson AK, Kepplinger B, Bakhiet SM, Bakhiet SM, Mhmoud NA, Chapman J, Allenby NE, Mickiewicz K, Goodfellow M, Fahal AH, Errington J. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0010128 | 2022 | ||
| Genetics | Genome sequence of the aurodox-producing bacterium Streptomyces goldiniensis ATCC 21386. | McHugh RE, Munnoch JT, Roe AJ, Hoskisson PA. | Access Microbiol | 10.1099/acmi.0.000358 | 2022 | |
| Metabolism | Purification and characterization of extracellular laccase produced by Ceriporiopsis subvermispora and decolorization of triphenylmethane dyes. | Chmelova D, Ondrejovic M. | J Basic Microbiol | 10.1002/jobm.201600152 | 2016 | |
| Mold Fungal Resistance of Loose-Fill Thermal Insulation Materials Based on Processed Wheat Straw, Corn Stalk and Reed. | Tupciauskas R, Orlovskis Z, Blums KT, Liepins J, Berzins A, Pavlovics G, Andzs M. | Polymers (Basel) | 10.3390/polym16040562 | 2024 | ||
| Genetics | Data on DNA-seq analysis of Endophytic Streptomyces sp. SUK 48. | Ahmad SJ, Zin NM. | Data Brief | 10.1016/j.dib.2021.106768 | 2021 | |
| Enzymology | Draft genome sequence of Streptomyces sp. strain F1, a potential source for glycoside hydrolases isolated from Brazilian soil. | Melo RR, Persinoti GF, Paixao DAA, Squina FM, Ruller R, Sato HH. | Braz J Microbiol | 10.1016/j.bjm.2016.11.010 | 2017 | |
| Transcriptome | Recently published Streptomyces genome sequences. | Harrison J, Studholme DJ. | Microb Biotechnol | 10.1111/1751-7915.12143 | 2014 | |
| Generation of an actagardine A variant library through saturation mutagenesis. | Boakes S, Ayala T, Herman M, Appleyard AN, Dawson MJ, Cortes J. | Appl Microbiol Biotechnol | 10.1007/s00253-012-4041-0 | 2012 | ||
| Dioxane Bridge Formation during the Biosynthesis of Spectinomycin Involves a Twitch Radical S-Adenosyl Methionine Dehydrogenase That May Have Evolved from an Epimerase. | Zhang J, Hou X, Chen Z, Ko Y, Ruszczycky MW, Chen Y, Zhou J, Liu HW. | J Am Chem Soc | 10.1021/jacs.2c02676 | 2022 | ||
| Two 3'-O-beta-glucosylated nucleoside fluorometabolites related to nucleocidin in Streptomyces calvus. | Feng X, Bello D, Lowe PT, Clark J, O'Hagan D. | Chem Sci | 10.1039/c9sc03374b | 2019 | ||
| Draft Genome Sequence of Thiostrepton-Producing Streptomyces azureus ATCC 14921. | Sakihara K, Maeda J, Tashiro K, Fujino Y, Kuhara S, Ohshima T, Ogata S, Doi K. | Genome Announc | 10.1128/genomea.01183-15 | 2015 | ||
| More P450s Are Involved in Secondary Metabolite Biosynthesis in Streptomyces Compared to Bacillus, Cyanobacteria, and Mycobacterium. | Mnguni FC, Padayachee T, Chen W, Gront D, Yu JH, Nelson DR, Syed K. | Int J Mol Sci | 10.3390/ijms21134814 | 2020 | ||
| Enzymatic Biosynthesis of Simple Phenolic Glycosides as Potential Anti-Melanogenic Antioxidants. | Jung H, Oh J, Kwon Y, Kang W, Seo M, Seol Y, Park JW. | Antioxidants (Basel) | 10.3390/antiox11071396 | 2022 | ||
| Metabolism | Identification, Cloning and Heterologous Expression of the Gene Cluster Directing RES-701-3, -4 Lasso Peptides Biosynthesis from a Marine Streptomyces Strain. | Oves-Costales D, Sanchez-Hidalgo M, Martin J, Genilloud O. | Mar Drugs | 10.3390/md18050238 | 2020 | |
| Molecular Characterization of Plasmids Harbored by Actinomycetes Isolated From the Great Salt Plains of Oklahoma Using PFGE and Next Generation Whole Genome Sequencing. | Cornell CR, Marasini D, Marasini D, Fakhr MK. | Front Microbiol | 10.3389/fmicb.2018.02282 | 2018 | ||
| Enzymology | Epoxinnamide: An Epoxy Cinnamoyl-Containing Nonribosomal Peptide from an Intertidal Mudflat-Derived Streptomyces sp. | Kang S, Han J, Jang SC, An JS, Kang I, Kwon Y, Nam SJ, Shim SH, Cho JC, Lee SK, Oh DC. | Mar Drugs | 10.3390/md20070455 | 2022 | |
| Metabolism | The l-Alanosine Gene Cluster Encodes a Pathway for Diazeniumdiolate Biosynthesis. | Ng TL, McCallum ME, Zheng CR, Wang JX, Wu KJY, Balskus EP. | Chembiochem | 10.1002/cbic.201900565 | 2020 | |
| P450-mediated dehydrotyrosine formation during WS9326 biosynthesis proceeds via dehydrogenation of a specific acylated dipeptide substrate. | Zhang S, Zhang L, Greule A, Tailhades J, Marschall E, Prasongpholchai P, Leng DJ, Zhang J, Zhu J, Kaczmarski JA, Schittenhelm RB, Einsle O, Jackson CJ, Alberti F, Bechthold A, Zhang Y, Tosin M, Si T, Cryle MJ. | Acta Pharm Sin B | 10.1016/j.apsb.2023.03.021 | 2023 | ||
| Enzymology | Purification, characterization, cytotoxicity and anticancer activities of L-asparaginase, anti-colon cancer protein, from the newly isolated alkaliphilic Streptomyces fradiae NEAE-82. | El-Naggar NE, Deraz SF, Soliman HM, El-Deeb NM, El-Ewasy SM. | Sci Rep | 10.1038/srep32926 | 2016 | |
| Safety evaluation of the food enzyme chymosin from the genetically modified Aspergillus niger strain DSM 29546. | EFSA Panel on Food Contact Materials, Enzymes and Processing Aids (CEP), Silano V, Barat Baviera JM, Bolognesi C, Cocconcelli PS, Crebelli R, Gott DM, Grob K, Lambre C, Lampi E, Mengelers M, Mortensen A, Riviere G, Steffensen IL, Tlustos C, Van Loveren H, Vernis L, Zorn H, Aguilera J, Andryszkiewicz M, de Sousa RF, Liu Y, di Piazza G, Rainieri S, Chesson A. | EFSA J | 10.2903/j.efsa.2022.7465 | 2022 | ||
| Mycelial differentiation and spore formation by Streptomyces brasiliensis in submerged culture. | Rueda B, Miguelez EM, Hardisson C, Manzanal MB. | Can J Microbiol | 10.1139/cjm-47-11-1042 | 2001 | ||
| Metabolism | Changes in glycogen and trehalose content of Streptomyces brasiliensis hyphae during growth in liquid cultures under sporulating and non-sporulating conditions. | Rueda B, Miguelez EM, Hardisson C, Manzanal MB. | FEMS Microbiol Lett | 10.1111/j.1574-6968.2001.tb09466.x | 2001 | |
| Evidence for an iterative module in chain elongation on the azalomycin polyketide synthase. | Hong H, Sun Y, Zhou Y, Stephens E, Samborskyy M, Leadlay PF. | Beilstein J Org Chem | 10.3762/bjoc.12.206 | 2016 | ||
| Metabolism | New WS9326A Derivatives and One New Annimycin Derivative with Antimalarial Activity are Produced by Streptomyces asterosporus DSM 41452 and Its Mutant. | Zhang S, Zhu J, Zechel DL, Jessen-Trefzer C, Eastman RT, Paululat T, Bechthold A. | Chembiochem | 10.1002/cbic.201700428 | 2018 | |
| Synthesis of allysine ethylene acetal using phenylalanine dehydrogenase from Thermoactinomyces intermedius. | Hanson RL, Howell JM, LaPorte TL, Donovan MJ, Cazzulino DL, Zannella V, Montana MA, Nanduri VB, Schwarz SR, Eiring RF, Durand SC, Wasylyk JM, Parker WL, Liu MS, Okuniewicz FJ, Chen B, Harris JC, Natalie KJ, Ramig K, Swaminathan S, Rosso VW, Pack SK, Lotz BT, Bernot PJ, Rusowicz A, Lust DA, Tse KS, Venit JJ, Szarka LJ, Patel RN. | Enzyme Microb Technol | 10.1016/s0141-0229(99)00175-1 | 2000 | ||
| Genotyping-Guided Discovery of Persiamycin A From Sponge-Associated Halophilic Streptomonospora sp. PA3. | Matroodi S, Siitonen V, Baral B, Yamada K, Akhgari A, Metsa-Ketela M. | Front Microbiol | 10.3389/fmicb.2020.01237 | 2020 | ||
| New Lipase for Biodiesel Production: Partial Purification and Characterization of LipSB 25-4. | Ugur A, Sarac N, Boran R, Ayaz B, Ceylan O, Okmen G. | ISRN Biochem | 10.1155/2014/289749 | 2014 | ||
| Metabolism | MS-282a and MS-282b, new inhibitors of calmodulin-activated myosin light chain kinase from Streptomyces tauricus ATCC 27470. | Nakanishi S, Kita K, Uosaki Y, Yoshida M, Saitoh Y, Mihara A, Kawamoto I, Matsuda Y. | J Antibiot (Tokyo) | 10.7164/antibiotics.47.855 | 1994 | |
| Metabolism | d-Sedoheptulose-7-phosphate is a common precursor for the heptoses of septacidin and hygromycin B. | Tang W, Guo Z, Cao Z, Wang M, Li P, Meng X, Zhao X, Xie Z, Wang W, Zhou A, Lou C, Chen Y. | Proc Natl Acad Sci U S A | 10.1073/pnas.1711665115 | 2018 | |
| Characterization of two different types of resistance genes among producers of fortimicin-group antibiotics. | Ohta T, Dairi T, Hasegawa M. | J Gen Microbiol | 10.1099/00221287-139-3-591 | 1993 | ||
| Enzymology | Rat hormone sensitive lipase inhibition by cyclipostins and their analogs. | Vasilieva E, Dutta S, Malla RK, Martin BP, Spilling CD, Dupureur CM. | Bioorg Med Chem | 10.1016/j.bmc.2015.01.028 | 2015 | |
| Partner choice and fidelity stabilize coevolution in a Cretaceous-age defensive symbiosis. | Kaltenpoth M, Roeser-Mueller K, Koehler S, Peterson A, Nechitaylo TY, Stubblefield JW, Herzner G, Seger J, Strohm E. | Proc Natl Acad Sci U S A | 10.1073/pnas.1400457111 | 2014 | ||
| Purine Auxotrophic Mutants with Altered Spore Color in Streptomyces azureus. ATCC 14921. | Yamada S, Hayashida S, Ogata S. | Appl Environ Microbiol | 10.1128/aem.56.2.575-577.1990 | 1990 | ||
| Metabolism | KorSA from the Streptomyces integrative element pSAM2 is a central transcriptional repressor: target genes and binding sites. | Sezonov G, Possoz C, Friedmann A, Pernodet JL, Guerineau M. | J Bacteriol | 10.1128/jb.182.5.1243-1250.2000 | 2000 | |
| Identification and localization of the gene cluster encoding biosynthesis of the antitumor macrolactam leinamycin in Streptomyces atroolivaceus S-140. | Cheng YQ, Tang GL, Shen B. | J Bacteriol | 10.1128/jb.184.24.7013-7024.2002 | 2002 | ||
| Action spectra for photoreactivation of ultraviolet-irradiated Escherichia coli and Streptomyces griseus. | KELNER A. | J Gen Physiol | 10.1085/jgp.34.6.835 | 1951 | ||
| Enzymology | Distribution of a Nocardia brasiliensis catalase gene fragment in members of the genera Nocardia, Gordona, and Rhodococcus. | Vera-Cabrera L, Johnson WM, Welsh O, Resendiz-Uresti FL, Salinas-Carmona MC. | J Clin Microbiol | 10.1128/jcm.37.6.1971-1976.1999 | 1999 | |
| Enzymology | Rapid identification of clinically significant species and taxa of aerobic actinomycetes, including Actinomadura, Gordona, Nocardia, Rhodococcus, Streptomyces, and Tsukamurella isolates, by DNA amplification and restriction endonuclease analysis. | Steingrube VA, Wilson RW, Brown BA, Jost KC, Blacklock Z, Gibson JL, Wallace RJ. | J Clin Microbiol | 10.1128/jcm.35.4.817-822.1997 | 1997 | |
| Genetics | Draft genome sequence of the human pathogen Streptomyces somaliensis, a significant cause of actinomycetoma. | Kirby R, Sangal V, Tucker NP, Zakrzewska-Czerwinska J, Wierzbicka K, Herron PR, Chu CJ, Chandra G, Fahal AH, Goodfellow M, Hoskisson PA | J Bacteriol | 10.1128/JB.00534-12 | 2012 | |
| Phylogeny | Streptomyces cupreus sp. nov., an antimicrobial producing actinobacterium isolated from Himalayan soil. | Maiti PK, Mandal S. | Arch Microbiol | 10.1007/s00203-020-02160-y | 2021 | |
| Phylogeny | Streptomyces tunisiensis sp. nov., a novel Streptomyces species with antibacterial activity. | Slama N, Mankai H, Ayed A, Mezhoud K, Rauch C, Lazim H, Barkallah I, Gtari M, Limam F. | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0086-z | 2014 | |
| Identification and genomic analyses of a novel endophytic actinobacterium Streptomyces endophytica sp. nov. with potential for biocontrol of yam anthracnose. | Zhou S, Zhou Y, Li C, Wu W, Xu Y, Xia W, Huang D, Huang X. | Front Microbiol | 10.3389/fmicb.2023.1139456 | 2023 | ||
| Phylogeny | Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963. | Henssge U, Do T, Radford DR, Gilbert SC, Clark D, Beighton D. | Int J Syst Evol Microbiol | 10.1099/ijs.0.000950-0 | 2009 |
| #9741 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40738 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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