Name: Streptomyces somaliensis Rhartoum
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15603

Type strain:

Species: Streptomyces somaliensis

Strain Designation: Rhartoum

Culture col. no.: DSM 40267, ATCC 19437, ATCC 23964, CBS 947.68, IFO 12916, IMET 43553, ISP 5267, JCM 4419, NBRC 12916, NCTC 3236, RIA 1188, JCM 12660

Strain history: NCTC 3236 <-- Wellcome Trop. Res. Labs., Khartoum, strain IX.

NCBI tax ID(s): 78355 (species)

SI-ID 92952

ATCC 19437, NCTC 3236, ATCC 23964, IFO 12916, DSM 40267, IMET 43553, JCM 4419, VKM Ac-1898, CBS 947.68, NBRC 12916, JCM 12660, BCRC 12332, CCRC 12332, NBIMCC 3332

Other strains from Streptomyces somaliensis

S. somaliensis DSM 40738, ATCC 33201, IMRU 1274, ... (type strain)
S. somaliensis 632, M 4054, DSM 40760, ATCC 14817, ...
S. somaliensis A 29, A-310, DSM 41607, IP 314
S. somaliensis A 235, DSM 41608, NCPF 1069
S. somaliensis A 236, DSM 41609, NCPF 1070
S. somaliensis A 239, DSM 41610, NCPF 1220
S. somaliensis A 320, DSM 41612, IP 313
S. somaliensis ST028314(HKI), 239/8,
S. somaliensis STI40135(IMET), INA1461/54, IMET ...
S. somaliensis CCUG 45534
S. somaliensis CCUG 46915
S. somaliensis CCUG 60535

Section

Streptomyces somaliensis Rhartoum is a mesophilic bacterium that was isolated from mycetoma.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces somaliensis**
	Full Scientific Name (LPSN)	Streptomyces somaliensis (Brumpt 1906) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Indiella somaliensis"

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #9420]

Caption:

Medium 65 28°C

[Ref.: #9420]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9420]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9420]

Culture medium growth

[Ref.: #9420]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9420]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9420]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9420]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #9420]	4322	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9420]	Sample type/isolated from	mycetoma

[Ref.: #67770]	Sample type/isolated from	Mycetoma
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host Body-Site	#Organ	#Skin, Nail, Hair
#Host	#Fungi	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ007400 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	39
Animal Samples	85
Plant Samples
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9420]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces somaliensis gene for 16S rRNA, partial sequence, strain: NBRC 12916	AB184243	1478	ENA	78355 tax ID	*
[Ref.: #20218]	Streptomyces somaliensis gene for 16S ribosomal RNA, partial sequence, strain: NBRC 12916	AB915616	931	ENA	78355 tax ID	*
[Ref.: #20218]	Streptomyces somaliensis gene for 16S ribosomal RNA, partial sequence, isolate: R1-2B/D805	AB922841	1086	ENA	78355 tax ID	*
[Ref.: #20218]	Streptomyces somaliensis gene for 16S ribosomal RNA, partial sequence, isolate: R1-2A/J806	AB922843	1132	ENA	78355 tax ID	*
[Ref.: #20218]	Streptomyces somaliensis strain DSM 40267, 16S rRNA gene	AJ007400	1480	ENA	78355 tax ID	*

Availability in culture collections External links

[Ref.: #9420]

Culture collection no.

DSM 40267, ATCC 19437, ATCC 23964, CBS 947.68, IFO 12916, IMET 43553, ISP 5267, JCM 4419, NBRC 12916, NCTC 3236, RIA 1188, JCM 12660

[Ref.: #84690]

SI-ID 92952

References

#9420

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40267

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#84690

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92952.1 )

* These data were automatically processed and therefore are not curated

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