Streptomyces somaliensis (DSM 40267, ATCC 19437, ATCC 23964)

Name: Streptomyces somaliensis (DSM 40267, ATCC 19437, ATCC 23964)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15603

Type strain

Strain Designation Rhartoum

Culture col. no. DSM 40267 ATCC 19437 ATCC 23964 CBS 947.68 IFO 12916 8 more

NCBI tax ID(s) 78355

Special Collections DSMZ JCM

Links

Streptomyces somaliensis Rhartoum is a mesophilic prokaryote that was isolated from mycetoma.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 92952

ATCC 19437,NCTC 3236,ATCC 23964,IFO 12916,DSM 40267,IMET 43553,JCM 4419,VKM Ac-1898,CBS 947.68,NBRC 12916,JCM 12660,BCRC 12332,CCRC 12332,NBIMCC 3332

@ref 20215

Last LPSN update 2025-12-16 09:50:38

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces somaliensis

Full scientific name Streptomyces somaliensis (Brumpt 1906) Waksman and Henrici 1948 (Approved Lists 1980)

Synonyms (1)

"Indiella somaliensis"

BacDive ID	Other strains from **Streptomyces somaliensis** (12)	Type strain
15604	S. somaliensis DSM 40738, ATCC 33201, IMRU 1274, IP 733, ... (type strain)
15605	S. somaliensis 632, M 4054, DSM 40760, ATCC 14817, NIH 9986
15606	S. somaliensis A 29, A-310, DSM 41607, IP 314
15607	S. somaliensis A 235, DSM 41608, NCPF 1069
15608	S. somaliensis A 236, DSM 41609, NCPF 1070
15609	S. somaliensis A 239, DSM 41610, NCPF 1220
15610	S. somaliensis A 320, DSM 41612, IP 313
128254	S. somaliensis ST028314(HKI), 239/8,
128255	S. somaliensis STI40135(IMET), INA1461/54, IMET 40135
152013	S. somaliensis CCUG 45534
152485	S. somaliensis CCUG 46915
156143	S. somaliensis CCUG 60535

Morphology

Multimedia

@ref:	9420
multimedia content:	DSM_40267.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40267.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9420	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9420	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9420	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68379	gelatinase	-		from API Coryne
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
9420	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host Body-Site	#Organ	#Skin, Nail, Hair
#Host	#Fungi	-

Isolation

@ref	Sample type
9420	mycetoma
67770	Mycetoma

Taxonmaps

69479

Global distribution of 16S sequence AJ007400 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	39
Animal Samples	85
Plant Samples
Total Samples	129

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9420	2	Risk group (German classification) According to TRBA 466

Phages

@ref	Name	Strain number
124042	Streptomyces phage S4	DSM 40267

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces somaliensis gene for 16S rRNA, partial sequence, strain: NBRC 12916	AB184243	1478	78355
20218	Streptomyces somaliensis gene for 16S ribosomal RNA, partial sequence, strain: NBRC 12916	AB915616	931	78355
20218	Streptomyces somaliensis gene for 16S ribosomal RNA, partial sequence, isolate: R1-2B/D805	AB922841	1086	78355
20218	Streptomyces somaliensis gene for 16S ribosomal RNA, partial sequence, isolate: R1-2A/J806	AB922843	1132	78355
20218	Streptomyces somaliensis strain DSM 40267, 16S rRNA gene	AJ007400	1480	78355

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Distribution of a Nocardia brasiliensis catalase gene fragment in members of the genera Nocardia, Gordona, and Rhodococcus.	Vera-Cabrera L, Johnson WM, Welsh O, Resendiz-Uresti FL, Salinas-Carmona MC.	J Clin Microbiol	10.1128/jcm.37.6.1971-1976.1999	1999
Phylogeny	Fatty acid characterization of rapidly growing pathogenic aerobic actinomycetes as a means of identification.	McNabb A, Shuttleworth R, Behme R, Colby WD.	J Clin Microbiol	10.1128/jcm.35.6.1361-1368.1997	1997

References

#9420	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40267
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124042	Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces somaliensis (DSM 40267, ATCC 19437, ATCC 23964)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Enzymes

API coryne

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Phages

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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