Name: Streptomyces sioyaensis H-690
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15602

Type strain:

Species: Streptomyces sioyaensis

Strain Designation: H-690

Culture col. no.: DSM 40032, ATCC 13989, ATCC 19810, CBS 563.68, IFO 12820, ISP 5032, JCM 4418, NBRC 12820, RIA 1090, BCRC 11878, CBS 4.1306, KCTC 9043, NBIMCC 492, NRRL B-5408, VKM Ac-1260

Strain history: KCC S-0418 <-- IFO 12820 <-- SAJ <-- ISP 5032 <-- H. Nishimura H-690.

NCBI tax ID(s): 67364 (species)

SI-ID 45549

ATCC 13989, ATCC 19810, IFO 12820, DSM 40032, JCM 4418, CCRC 11878, NRRL B-5408, VKM Ac-1260, CBS 563.68, CBS 198.75, IMET 43860, KCTC 9043, NBRC 12820, BCRC 11878, NBIMCC 492, CGMCC 4.1306

Other strains from Streptomyces sioyaensis

S. sioyaensis ST030546(HKI),

Section

Streptomyces sioyaensis H-690 is a spore-forming, mesophilic bacterium that produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces sioyaensis**
	Full Scientific Name (LPSN)	Streptomyces sioyaensis Nishimura et al. 1961 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.688

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #9231]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9231]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9231]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9231]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

[Ref.: #9231]	Name of produced compound	siomycine
[Ref.: #20216]	Name of produced compound	Siomycin
[Ref.: #67770]	Name of produced compound	Siomycin

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9231]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces sioyaensis gene for 16S rRNA, partial sequence	AB122743	565	ENA	67364 tax ID	*
[Ref.: #20218]	Streptomyces sioyaensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4418	D44131	121	ENA	67364 tax ID	*
[Ref.: #20218]	Streptomyces sioyaensis gene for 16S rRNA, partial sequence, strain: NBRC 12820	AB184171	1465	ENA	67364 tax ID	*
[Ref.: #20218]	Streptomyces sioyaensis strain NRRL B-5408 16S ribosomal RNA gene, partial sequence	DQ026654	1489	ENA	67364 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces sioyaensis DSM 40032	GCA_004122735	contig	GenBank	67364 tax ID
[Ref.: #66792]	Streptomyces sioyaensis strain DSM 40032	67364.4	wgs	PATRIC	67364 tax ID	*
[Ref.: #66792]	Streptomyces sioyaensis ATCC 13989	2563366712	draft	JGI IMG/M	67364 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces sioyaensis strain DSM 40032 PATRIC: 67364.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces sioyaensis strain DSM 40032 PATRIC: 67364.4
[Ref.: #69480]	gram-positive	yes	89.436	no
[Ref.: #69480]	anaerobic	no	99.152	no
[Ref.: #69480]	halophile	no	90.755	no
[Ref.: #69480]	spore-forming	yes	95.679	no
[Ref.: #69480]	glucose-util	yes	91.912	no
[Ref.: #69480]	thermophile	no	96.324	yes
[Ref.: #69480]	flagellated	no	98.452	no
[Ref.: #69480]	motile	no	93.543	no
[Ref.: #69480]	aerobic	yes	90.518	no
[Ref.: #69480]	glucose-ferment	no	92.659	no

Availability in culture collections External links

[Ref.: #9231]

Culture collection no.

DSM 40032, ATCC 13989, ATCC 19810, CBS 563.68, IFO 12820, ISP 5032, JCM 4418, NBRC 12820, RIA 1090, BCRC 11878, CBS 4.1306, KCTC 9043, NBIMCC 492, NRRL B-5408, VKM Ac-1260

[Ref.: #84689]

SI-ID 45549

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Bioactivities and genome insights of a thermotolerant antibiotics-producing Streptomyces sp. TM32 reveal its potentials for novel drug discovery.	Nakaew N, Lumyong S, Sloan WT, Sungthong R	Microbiologyopen	10.1002/mbo3.842	2019	*
Phylogeny	Streptomyces inhibens sp. nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Jin L, Zhao Y, Song W, Duan L, Jiang S, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003204	2019	*

References

#9231

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40032

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84689

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45549.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces sioyaensis strain DSM 40032

Streptomyces sioyaensis strain DSM 40032

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