Name: Streptomyces sindenensis 1071
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15600

Type strain:

Species: Streptomyces sindenensis

Strain Designation: 1071

Culture col. no.: DSM 40255, ATCC 23963, CBS 946.68, IFO 12915, IFO 3399, ISP 5255, JCM 4164, JCM 4669, NBRC 12915, NBRC 3399, RIA 1181, BCRC 11887, CGMCC 4.0626, CGMCC 4.1932, KCTC 19971, NRRL B-1866

Strain history: KCC S-0164 <-- IFO 3399 <-- K. Nakazawa 1071.

NCBI tax ID(s): 67363 (species)

SI-ID 45735

ATCC 23963, IFO 3399, IFO 12915, DSM 40255, JCM 4164, CCRC 11887, NRRL B-1866, JCM 4669, CBS 946.68, NBRC 12915, NBRC 3399, BCRC 11887, KCTC 19971, CGMCC 4.0626, CGMCC 4.1932, AS 4.0626

Special Collections

Other strains from Streptomyces sindenensis

Section

Streptomyces sindenensis 1071 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces sindenensis**
	Full Scientific Name (LPSN)	Streptomyces sindenensis Nakazawa and Fujii 1957 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.217

Multimedia content

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Caption:

Medium 84 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9409]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.866
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

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Name of produced compound

amicetin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		amicetin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9409]	Sample type/isolated from	soil
[Ref.: #9409]	Country	Japan
[Ref.: #9409]	Country ISO 3 Code	JPN
[Ref.: #9409]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shinden, Mishima-gun, Osaka Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence AB184759 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces sindenensis strain IFO 12915 16S ribosomal RNA gene, partial sequence	AY999860	1422	GenBank ENA	67363 tax ID	*
[Ref.: #20218]	Streptomyces sindenensis gene for 16S rRNA, partial sequence	AB122710	564	GenBank ENA	67363 tax ID	*
[Ref.: #20218]	Streptomyces sindenensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4669	D44297	120	GenBank ENA	67363 tax ID	*
[Ref.: #20218]	Streptomyces sindenensis gene for 16S rRNA, partial sequence, strain: NBRC 12915	AB184242	1468	GenBank ENA	67363 tax ID	*
[Ref.: #20218]	Streptomyces sindenensis gene for 16S rRNA, partial sequence, strain: NBRC 3399	AB184759	1479	GenBank ENA	67363 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces sindenensis JCM 4164	GCA_014649035	contig	GenBank ENA	67363 tax ID	*
[Ref.: #66792]	Streptomyces sindenensis strain JCM 4164	67363.3	wgs	PATRIC	67363 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces sindenensis strain JCM 4164 PATRIC: 67363.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces sindenensis strain JCM 4164 PATRIC: 67363.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.217	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.313	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.866	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.223	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

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Culture collection no.

DSM 40255, ATCC 23963, CBS 946.68, IFO 12915, IFO 3399, ISP 5255, JCM 4164, JCM 4669, NBRC 12915, NBRC 3399, RIA 1181, BCRC 11887, CGMCC 4.0626, CGMCC 4.1932, KCTC 19971, NRRL B-1866

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SI-ID 45735

References

#9409

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40255

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84687

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45735.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces sindenensis strain JCM 4164

Streptomyces sindenensis strain JCM 4164

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