Strain identifier
BacDive ID: 15600
Type strain: 
Species: Streptomyces sindenensis
Strain Designation: 1071
Strain history: KCC S-0164 <-- IFO 3399 <-- K. Nakazawa 1071.
NCBI tax ID(s): 67363 (species)
version 8.1 (current version)
General
@ref: 9409
BacDive-ID: 15600
DSM-Number: 40255
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, antibiotic compound production
description: Streptomyces sindenensis 1071 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 67363
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9409 | <- E.B. Shirling, ISP <- K. Nakazawa, 1071 |
| 67770 | KCC S-0164 <-- IFO 3399 <-- K. Nakazawa 1071. |
doi: 10.13145/bacdive15600.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces sindenensis
- full scientific name: Streptomyces sindenensis Nakazawa and Fujii 1957 (Approved Lists 1980)
@ref: 9409
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces sindenensis
full scientific name: Streptomyces sindenensis Nakazawa and Fujii 1957
strain designation: 1071
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
- @ref: 9409
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40255.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9409 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9409 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9409 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
compound production
- @ref: 9409
- compound: amicetin
metabolite production
- @ref: 67770
- metabolite: amicetin
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 9409 | soil | Japan | JPN | Asia | |
| 67770 | Soil | Japan | JPN | Asia | Shinden, Mishima-gun, Osaka Pref. |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_135.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184759
- Sequence Identity:
- Total samples: 4030
- soil counts: 2441
- aquatic counts: 286
- animal counts: 1009
- plant counts: 294
Safety information
risk assessment
- @ref: 9409
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces sindenensis strain IFO 12915 16S ribosomal RNA gene, partial sequence | AY999860 | 1422 | ena | 67363 |
| 20218 | Streptomyces sindenensis gene for 16S rRNA, partial sequence | AB122710 | 564 | ena | 67363 |
| 20218 | Streptomyces sindenensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4669 | D44297 | 120 | ena | 67363 |
| 20218 | Streptomyces sindenensis gene for 16S rRNA, partial sequence, strain: NBRC 12915 | AB184242 | 1468 | ena | 67363 |
| 20218 | Streptomyces sindenensis gene for 16S rRNA, partial sequence, strain: NBRC 3399 | AB184759 | 1479 | ena | 67363 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces sindenensis JCM 4164 | GCA_014649035 | contig | ncbi | 67363 |
| 66792 | Streptomyces sindenensis strain JCM 4164 | 67363.3 | wgs | patric | 67363 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 90.808 | no |
| anaerobic | no | 99.243 | no |
| halophile | no | 91.552 | no |
| spore-forming | yes | 93.748 | no |
| glucose-util | yes | 87.979 | no |
| thermophile | no | 98.932 | no |
| flagellated | no | 97.833 | no |
| motile | no | 94.118 | no |
| aerobic | yes | 93.055 | no |
| glucose-ferment | no | 86.043 | no |
External links
@ref: 9409
culture collection no.: DSM 40255, ATCC 23963, CBS 946.68, IFO 12915, IFO 3399, ISP 5255, JCM 4164, JCM 4669, NBRC 12915, NBRC 3399, RIA 1181, BCRC 11887, CGMCC 4.0626, CGMCC 4.1932, KCTC 19971, NRRL B-1866
straininfo link
- @ref: 84687
- straininfo: 45735
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9409 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40255) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40255 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84687 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45735.1 | StrainInfo: A central database for resolving microbial strain identifiers |