Name: Schaalia odontolytica 1A.21
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 156

Type strain:

Species: Schaalia odontolytica

Strain Designation: 1A.21, A.21

Culture col. no.: DSM 43331, ATCC 17982, NCTC 9931, WVU 868, CIP 104728, CCUG 18309

Strain history: CIP <- 1996, CCUG <- 1986, H. Prauser, IMET <- DSM <- M.A. Gerencser: strain WVU 868 <- ATCC <- NCTC <- I. Batty: strain A.21

NCBI tax ID(s): 411466 (strain), 1660 (species)

SI-ID 36796

ATCC 17982, NCTC 9931, CCUG 4866, CCUG 18309, IMET 10975, DSM 43331, CIP 104728, CECT 807, NCYC 9931

Special Collections

Other strains from Schaalia odontolytica

Section

Schaalia odontolytica 1A.21 is an anaerobe, Gram-positive human pathogen that was isolated from carious lesions of the human dentine.

Gram-positive
anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Schaalia*
	Species	**Schaalia odontolytica**
	Full Scientific Name (LPSN)	Schaalia odontolytica (Batty 1958) Nouioui et al. 2018

Synonym

Actinomyces odontolyticus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %96.875

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39862]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #39862]

Culture medium growth

[Ref.: #39862]

Culture medium composition

expand / minimize

[Ref.: #10959]

Culture medium

BHI/3 MEDIUM (DSMZ Medium 218)

[Ref.: #10959]

Culture medium growth

[Ref.: #10959]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10959]

Culture medium composition

expand / minimize

[Ref.: #121390]

Culture medium

CIP Medium 6

[Ref.: #121390]

Culture medium growth

[Ref.: #121390]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #10959]			growth	37 °C
[Ref.: #39862]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #10959]	Oxygen tolerance	anaerobe
[Ref.: #10959]	Oxygen tolerance	microaerophile

[Ref.: #69481]

Ability of spore formation

no Confidence in %94

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	+	reduction	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #10959]	12877	-	-	-	+	-	+	+	-	-	-	+	+	-	-	+	-	-	+	+	+	+	+	-	+	+	+	+/-	-	+
[Ref.: #10959]	12876	-	-	+	+	-	+	+	-	-	-	-	+/-	-	+/-	+	-	-	+	+	+	+	+	-	+	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10959]	Sample type/isolated from	carious lesions of the human dentine

[Ref.: #121390]	Sample type/isolated from	Human, Carious lesions of the dentine
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Tooth
#Host Body-Site	#Other	#Wound

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10959]	Pathogenicity (human)	yes
[Ref.: #10959]	Pathogenicity (animal)	yes
[Ref.: #10959]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121390]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Schaalia odontolytica strain NCTC 9931 16S ribosomal RNA gene, partial sequence.	OR133757	1548	GenBank ENA	1660 tax ID	*
[Ref.: #124043]	Actinomyces odontolyticus 16S rRNA gene, strain CCUG 18309	AJ234037	1392	GenBank ENA	1660 tax ID	*
[Ref.: #124043]	Actinomyces odontolyticus partial 16S rRNA	X53227	1375	GenBank ENA	411466 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Schaalia odontolytica ATCC 17982	GCA_000154225	scaffold	GenBank ENA	411466 tax ID	*
[Ref.: #66792]	Actinomyces odontolyticus ATCC 17982	411466.7	wgs	PATRIC	411466 tax ID	*
[Ref.: #66792]	Schaalia odontolytica ATCC 17982	640963058	draft	JGI IMG/M	411466 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomyces odontolyticus ATCC 17982 PATRIC: 411466.7
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	94	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Schaalia odontolytica ATCC 17982 ATCC 17982 NCBI: GCA_000154225.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.917	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	71.745	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	78.277	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.59	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.792	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	96.875	no

Availability in culture collections External links

[Ref.: #10959]

Culture collection no.

DSM 43331, ATCC 17982, NCTC 9931, WVU 868, CIP 104728, CCUG 18309

[Ref.: #69838]

SI-ID 36796

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	The effects of chlorhexidine gluconate (0.12%) on the antimicrobial properties of tooth-colored ProRoot mineral trioxide aggregate.	Stowe TJ, Sedgley CM, Stowe B, Fenno JC	J Endod	10.1097/00004770-200406000-00013	2004	*
Metabolism	Human salivary acidic proline-rich proteins and statherin promote the attachment of Actinomyces viscosus LY7 to apatitic surfaces.	Gibbons RJ, Hay DI	Infect Immun	10.1128/iai.56.2.439-445.1988	1988	*

References

#10959

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43331

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39862 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69838

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36796.1 )

#121390 Collection of Institut Pasteur ; Curators of the CIP; CIP 104728

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Actinomyces odontolyticus ATCC 17982

Schaalia odontolytica ATCC 17982 ATCC 17982

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