Strain identifier

BacDive ID: 156

Type strain: No

Species: Schaalia odontolytica

Strain Designation: 1A.21, A.21

Strain history: CIP <- 1996, CCUG <- 1986, H. Prauser, IMET <- DSM <- M.A. Gerencser: strain WVU 868 <- ATCC <- NCTC <- I. Batty: strain A.21

NCBI tax ID(s): 411466 (strain), 1660 (species)

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General

@ref: 10959

BacDive-ID: 156

DSM-Number: 43331

keywords: genome sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Schaalia odontolytica 1A.21 is an anaerobe, mesophilic human pathogen that was isolated from carious lesions of the human dentine.

NCBI tax id

NCBI tax idMatching level
411466strain
1660species

strain history

@refhistory
10959<- M.A. Gerencser, WVU 868 <- ATCC <- NCTC <- I. Batty, 1A.21
121390CIP <- 1996, CCUG <- 1986, H. Prauser, IMET <- DSM <- M.A. Gerencser: strain WVU 868 <- ATCC <- NCTC <- I. Batty: strain A.21

doi: 10.13145/bacdive156.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Schaalia
  • species: Schaalia odontolytica
  • full scientific name: Schaalia odontolytica (Batty 1958) Nouioui et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces odontolyticus

@ref: 10959

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Schaalia

species: Schaalia odontolytica

full scientific name: Schaalia odontolytica (Batty 1958) Nouioui et al. 2018

strain designation: 1A.21, A.21

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.566
6948099.999positive

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39862MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
10959BHI/3 MEDIUM (DSMZ Medium 218)yesName: BHI/3 MEDIUM (DSMZ Medium 218) Composition: Brain heart infusion 37.0 g/l Casein hydrolysate 10.0 g/l Starch 1.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/218
121390CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
39862positivegrowth37mesophilic
10959positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
10959anaerobe
10959microaerophile
69480anaerobe97.388

spore formation

@refspore formationconfidence
69481no94
69480no99.994

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838029985L-glutamate-degradation
6838017632nitrate+reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
10959---+-++---++--+--+++++-++++/--+
10959--++-++----+/--+/-+--+++++-++++-+

Isolation, sampling and environmental information

isolation

@refsample type
10959carious lesions of the human dentine
121390Human, Carious lesions of the dentine

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Tooth
#Host Body-Site#Other#Wound

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
10959yesyes2Risk group (German classification)
1213902Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Schaalia odontolytica ATCC 17982GCA_000154225scaffoldncbi411466
66792Actinomyces odontolyticus ATCC 17982411466.7wgspatric411466
66792Schaalia odontolytica ATCC 17982640963058draftimg411466

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno94no
motileno94.927no
flagellatedno97.302no
gram-positiveyes94.097no
anaerobicno63.84no
aerobicno95.705yes
halophileno88.24no
spore-formingno92.622no
thermophileno82.838yes
glucose-utilyes89.228no
glucose-fermentyes81.913no

External links

@ref: 10959

culture collection no.: DSM 43331, ATCC 17982, NCTC 9931, WVU 868, CIP 104728, CCUG 18309

straininfo link

  • @ref: 69838
  • straininfo: 36796

literature

topicPubmed-IDtitleauthorsjournalDOIyearmesh
Metabolism2892794Human salivary acidic proline-rich proteins and statherin promote the attachment of Actinomyces viscosus LY7 to apatitic surfaces.Gibbons RJ, Hay DIInfect Immun10.1128/iai.56.2.439-445.19881988Actinomyces/*physiology, Adsorption, *Bacterial Adhesion, Dental Plaque/*microbiology, Fimbriae, Bacterial, Hydroxyapatites, Peptide Fragments/metabolism, Salivary Proteins and Peptides/*physiology
Pathogenicity15167473The effects of chlorhexidine gluconate (0.12%) on the antimicrobial properties of tooth-colored ProRoot mineral trioxide aggregate.Stowe TJ, Sedgley CM, Stowe B, Fenno JCJ Endod10.1097/00004770-200406000-000132004Actinomyces/drug effects, Aluminum Compounds/chemistry/*pharmacology, Calcium Compounds/chemistry/*pharmacology, Candida albicans/drug effects, Chlorhexidine/*analogs & derivatives/chemistry/*pharmacology, Color, Disinfectants/chemistry/*pharmacology, Drug Combinations, Drug Synergism, Enterococcus faecalis/drug effects, Escherichia coli/drug effects, Fusobacterium nucleatum/drug effects, Humans, Materials Testing, Oxides/chemistry/*pharmacology, Pseudomonas aeruginosa/drug effects, Root Canal Filling Materials/chemistry/*pharmacology, Silicates/chemistry/*pharmacology, Single-Blind Method, Staphylococcus aureus/drug effects, Streptococcus sanguis/drug effects, Temperature

Reference

@idauthorscataloguedoi/urltitle
10959Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43331)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43331
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39862Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16669
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69838Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36796.1StrainInfo: A central database for resolving microbial strain identifiers
121390Curators of the CIPCollection of Institut Pasteur (CIP 104728)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104728