Phocaeicola sartorii (CCUG 59335, JCM 16497)

Name: Phocaeicola sartorii (CCUG 59335, JCM 16497)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 155796

Type strain

Culture col. no. CCUG 59335 JCM 16497

NCBI tax ID(s) 671267

Special Collections CCUG JCM

History JCM <-- M. Kitahara ST170.

Links

Phocaeicola sartorii CCUG 59335 is an anaerobe bacterium that was isolated from Chinchilla feces .

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411010

JCM 16497,CCUG 59335

@ref 20215

Last LPSN update 2026-05-29 08:43:21

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Phocaeicola

Species Phocaeicola sartorii

Full scientific name Phocaeicola sartorii (Clavel et al. 2010) García-López et al. 2020

Synonyms (3)

Phocaeicola chinchillae
Bacteroides sartorii
Bacteroides chinchillae

BacDive ID	Other strains from **Phocaeicola sartorii** (3)	Type strain
1627	P. sartorii A-C2-0, AC20, DSM 21941, CCUG 57211, JCM ... (type strain)
161796	P. sartorii JCM 16498
169623	P. sartorii CLA-AV-12, DSM 110081

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	93.347

Colony morphology

61918

Incubation period2 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
61918	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
61918	anaerobe
125438	anaerobe	91.274
125439	obligate anaerobe	91.582

Spore formation

@ref	Spore formation	Confidence
125438		91.466
125439		99.012

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Rodentia (Other)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
61918	Chinchilla feces (Chinchilla lanigera)	Japan	JPN	Asia
67770	Chinchilla feces

Taxonmaps

69479

Global distribution of 16S sequence AB531490 (>99% sequence identity) for Phocaeicola sartorii subclade from Microbeatlas

Aquatic Samples	3072
Soil Samples	1570
Animal Samples	116898
Plant Samples	449
Total Samples	121989

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM61564v1 assembly for Phocaeicola sartorii JCM 16497	contig	GCA_000615645	1236538.3	2565956596	1236538	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Bacteroides chinchillae gene for 16S rRNA, partial sequence, strain: JCM 16497	AB531490	1490		1236538
67770	Bacteroides chinchillae gene for 16S ribosomal RNA, partial sequence	AB547636	1490		1236538

GC content

@ref	GC-content (mol%)	Method
67770	45.2	high performance liquid chromatography (HPLC)
67770	44.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM61564v1 assembly for Phocaeicola sartorii JCM 16497
NCBI: GCA_000615645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	91.58	no
125439	gram_stain	BacteriaNetⓘ	negative	86.94	no
125439	motility	BacteriaNetⓘ	no	75.21	no
125439	spore_formation	BacteriaNetⓘ	no	99.01	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides sartorii JCM 16497
PATRIC: 1236538.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.35	no
125438	anaerobic	anaerobicⓘ	yes	91.27	yes
125438	spore-forming	spore-formingⓘ	no	91.47	no
125438	aerobic	aerobicⓘ	no	93.22	yes
125438	thermophilic	thermophileⓘ	no	94.45	no
125438	flagellated	motile2+ⓘ	no	88.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
	Rapid and robust squashed spore/colony PCR of industrially important fungi.	Yuan G, Czajka JJ, Dai Z, Hu D, Pomraning KR, Hofstad BA, Kim J, Robles AL, Deng S, Magnuson JK.	Fungal Biol Biotechnol	10.1186/s40694-023-00163-0	2023
	Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal.	Kearney SM, Gibbons SM, Erdman SE, Alm EJ.	Cell Rep	10.1016/j.celrep.2018.07.032	2018
Phylogeny	Bacteroides sartorii is an earlier heterotypic synonym of Bacteroides chinchillae and has priority.	Sakamoto M, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.035659-0	2011
Phylogeny	Actinomadura rayongensis sp. nov., isolated from peat swamp forest soil.	Phongsopitanun W, Tanasupawat S, Suwanborirux K, Ohkuma M, Kudo T.	Int J Syst Evol Microbiol	10.1099/ijs.0.000033	2015
Phylogeny	Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces.	Kitahara M, Tsuchida S, Kawasumi K, Amao H, Sakamoto M, Benno Y, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.024026-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61918	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59335
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Phocaeicola sartorii (CCUG 59335, JCM 16497)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000615645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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