Phocaeicola sartorii (DSM 21941, CCUG 57211, JCM 17136)

Name: Phocaeicola sartorii (DSM 21941, CCUG 57211, JCM 17136)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1627

Type strain

Strain Designation A-C2-0, AC20

Culture col. no. DSM 21941 CCUG 57211 JCM 17136 A-C2-0 AC20

NCBI tax ID(s) 671267

Special Collections DSMZ CCUG JCM Mouse DZIF

History <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; A-C2-0 <- A. Saalfrank CCUG 57211 <-- A. Saalfrank A-C2-0.

Links

Phocaeicola sartorii A-C2-0 is an anaerobe bacterium that was isolated from caecum of a 5-week-old male heterozygous TNF^deltaARE C57BL/6 mouse.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404753

JCM 17136,DSM 21941,CCUG 57211

@ref 20215

Last LPSN update 2026-02-09 11:18:09

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Phocaeicola

Species Phocaeicola sartorii

Full scientific name Phocaeicola sartorii (Clavel et al. 2010) García-López et al. 2020

Synonyms (3)

Phocaeicola chinchillae
Bacteroides sartorii
Bacteroides chinchillae

BacDive ID	Other strains from **Phocaeicola sartorii** (2)	Type strain
161796	P. sartorii JCM 16498
169623	P. sartorii CLA-AV-12, DSM 110081

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.628
125439	negative	98.6

Colony morphology

61243

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16058	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16058	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16058	positive	growth	37
61243	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16058	anaerobe
61243	anaerobe
125438	anaerobe	90.399
125439	obligate anaerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125438		92.478
125439		99.7

Observation

67770

Observationquinones: MK-9, MK-10, MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	-	builds acid from	from API 20A
68367	16024 ChEBI	D-mannose	+	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	+	builds acid from	from API 20A
68367	5291 ChEBI	gelatin	-	hydrolysis	from API 20A
68367	17754 ChEBI	glycerol	-	builds acid from	from API 20A
68367	30849 ChEBI	L-arabinose	+	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	+	degradation	from API rID32A
68367	62345 ChEBI	L-rhamnose	+	builds acid from	from API 20A
68367	17716 ChEBI	lactose	+	builds acid from	from API 20A
68367	17306 ChEBI	maltose	+	builds acid from	from API 20A
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68367	17814 ChEBI	salicin	-	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	-	builds acid from	from API 20A
68367	17992 ChEBI	sucrose	-	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	-	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
68367	35581 ChEBI	indole		from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68367	gelatinase	-		from API 20A
68380	glutamate decarboxylase	+	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
16058	-	-	+	-	+	-	+	-	+	+	-	+/-	-	+/-	+	-	+/-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
16058	-	-	+	+	-	+	+/-	+	-	+	+	-	+	+	-	-	+	+	-	+	-	+	-	-	+	+	-	-	-
16058	-	-	+/-	+	-	+	-	-	-	+	-	+/-	+	+/-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
16058	-	-	+	+	-	+	+	+	-	+	+/-	+/-	+	+	-	-	+	+/-	-	+	-	+/-	-	-	+	+/-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16058	caecum of a 5-week-old male heterozygous TNF^deltaARE C57BL/6 mouse	Freising	Germany	DEU	Europe
61243	Mouse intestine	Freising	Germany	DEU	Europe
67770	Mouse cecal samples

Taxonmaps

69479

Global distribution of 16S sequence GQ456204 (>99% sequence identity) for Phocaeicola sartorii subclade from Microbeatlas

Aquatic Samples	3072
Soil Samples	1570
Animal Samples	116898
Plant Samples	449
Total Samples	121989

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16058	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score	IMG accession
66792	ASM2462202v1 assembly for Phocaeicola sartorii DSM 21941	contig	GCA_024622025	671267.23	671267	64.6
67770	ASM61418v1 assembly for Phocaeicola sartorii JCM 17136 = DSM 21941	contig	GCA_000614185	1236515.3	1236515		2585427920

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Bacteroides sartorii gene for 16S ribosomal RNA, partial sequence	AB572597	1490		1236515
16058	Bacteroides sartorii JCM 17136 = DSM 21941 strain A-C2-0 16S ribosomal RNA gene, partial sequence	GQ456204	1468		1236515

GC content

@ref	GC-content (mol%)	Method
16058	41.5	high performance liquid chromatography (HPLC)
67770	43.8	genome sequence analysis
67770	45.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Phocaeicola sartorii JCM 17136 = DSM 21941
NCBI: GCA_000614185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	no	78.40	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides sartorii JCM 17136 = DSM 21941
PATRIC: 1236515.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.63	no
125438	anaerobic	anaerobicⓘ	yes	90.40	yes
125438	spore-forming	spore-formingⓘ	no	92.48	no
125438	aerobic	aerobicⓘ	no	94.35	yes
125438	thermophilic	thermophileⓘ	no	94.24	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Human LYPD8 protein inhibits motility of flagellated bacteria.	Hsu CC, Okumura R, Takeda K.	Inflamm Regen	10.1186/s41232-017-0056-3	2017
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
Phylogeny	Bacteroides sartorii is an earlier heterotypic synonym of Bacteroides chinchillae and has priority.	Sakamoto M, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.035659-0	2011
Phylogeny	Isolation of bacteria from mouse caecal samples and description of Bacteroides sartorii sp. nov.	Clavel T, Saalfrank A, Charrier C, Haller D	Arch Microbiol	10.1007/s00203-010-0568-6	2010

References

#16058	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21941
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#61243	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57211
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Phocaeicola sartorii (DSM 21941, CCUG 57211, JCM 17136)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20A

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024622025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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