Streptomyces rishiriensis (DSM 40489, ATCC 14812, CBS 708.72)

Name: Streptomyces rishiriensis (DSM 40489, ATCC 14812, CBS 708.72)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15552

Type strain

Strain Designation 404Y3

Culture col. no. DSM 40489 ATCC 14812 CBS 708.72 IFO 13407 ISP 5489 9 more

NCBI tax ID(s) 68264

Special Collections DSMZ JCM Wink compendium

History <- E.B. Shirling, ISP <- ATCC <- Bristol-Banyu Res. Inst., 404Y3 KCC S-0821 <-- IFO 13407 <-- SAJ <-- ISP 5489 <-- ATCC 14812 <-- Banyu Res. Labs.; 404Y3.

Links

Streptomyces rishiriensis 404Y3 is a spore-forming, mesophilic prokaryote that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production spore-forming mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389317

ATCC 14812,IFO 13407,NCIB 11890,DSM 40489,JCM 4821,CCRC 12333,NCIMB 11890,NRRL B-3239,VKM Ac-1188,CBS 708.72,IMET 43843,NBRC 13407,BCRC 12333,CGMCC 4.1793,LMG 20297

@ref 20215

Last LPSN update 2025-12-16 09:50:38

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces rishiriensis

Full scientific name Streptomyces rishiriensis Kawaguchi et al. 1965 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces rishiriensis** (3)	Type strain
15348	S. rishiriensis Tü 43, DSM 40713, NRRL 2856, ETH 21510, ... (type strain)
127823	S. rishiriensis ST005130(HKI), China, IMET 40348
127824	S. rishiriensis ST005451(HKI),

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.939
125439	positive	99.7
125439		90.3

Colony morphology

@ref	Colony color	Incubation period	Medium used
19464	Brown	10-14 days	ISP 2
19464	Yellow	10-14 days	ISP 3
19464	Beige	10-14 days	ISP 4
19464	Yellow	10-14 days	ISP 5

Multicellular morphology

@ref	Complex name	Complex color	Medium name
19464	Aerial Mycelium	Grey	ISP 2
19464	Aerial Mycelium	Yellow/ grey	ISP 3
19464	Aerial Mycelium	Grey	ISP 4
19464	Aerial Mycelium	White	ISP 5
19464			ISP 6
19464			ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9594	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19464	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19464	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19464	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19464	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
9594	SPORULATION-AGAR (SA) (DSMZ Medium 555)	Medium recipe at MediaDive	Name: SPORULATION-AGAR (SA) (DSMZ Medium 555) Composition: Agar 15.0 g/l Glucose 10.0 g/l Tryptone peptone 2.0 g/l Beef extract 1.0 g/l Yeast extract 1.0 g/l Distilled water FeSO4

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9594	positive	growth	28	mesophilic
19464	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.469
125439	obligate aerobe	98.3

Spore formation

@ref	Spore description	Type of spore	Confidence
19464	Formation of spore chains (rectiflixibilis), spore surface smooth	spore
125438			90.85
125439			91.4

Compound production

@ref	Compound
9594	coumermycin complex
9594	notomycin
20216	Coumermycin complex
20216	Notomycin
19464	Ansatrienin
19464	Chloradenosin
19464	Phosphophenylalanylarginine
19464	Coumermycin (Notomycin)
19464	Rishirilide
67770	Coumermycins

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19464	NaCl	positive	maximum	2.5 %

Tolerance

@ref	Compound	Percentage
19464	Lysozyme	0.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19464	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
19464	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
19464	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
19464	29864 ChEBI	mannitol	+
19464	17268 ChEBI	myo-inositol	+
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
19464	16634 ChEBI	raffinose	-
19464	26546 ChEBI	rhamnose	+
19464	17992 ChEBI	sucrose	+
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
19464	18222 ChEBI	xylose	+

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19464	+	-	-	-	-	-	-	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
9594	soil		Japan	JPN	Asia
67770	Soil	Rishiri Island, Hokkaido	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB184383 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	336
Soil Samples	6184
Animal Samples	393
Plant Samples	2931
Total Samples	9844

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9594	1	Risk group (German classification) According to TRBA 466
19464	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Streptomyces rishiriensis DSM 40489	complete			2563366710	68264	95.59
67770	ASM311253v1 assembly for Streptomyces rishiriensis NBRC 13407	scaffold	GCA_003112535	68264.3	2862413135	68264	63.66

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces rishiriensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4821	D44388	120	68264
20218	Streptomyces rishiriensis gene for 16S rRNA, partial sequence, strain: NBRC 13407	AB184383	1473	68264
20218	Streptomyces rishiriensis strain NRRL B-3239 16S ribosomal RNA gene, partial sequence	EF178682	1474	68264

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces rishiriensis NBRC 13407
NCBI: GCA_003112535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	91.40	no
125439	motility	BacteriaNetⓘ	no	90.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces rishiriensis strain NBRC 13407
PATRIC: 68264.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.94	no
125438	anaerobic	anaerobicⓘ	no	97.41	no
125438	spore-forming	spore-formingⓘ	yes	90.85	no
125438	aerobic	aerobicⓘ	yes	92.47	no
125438	thermophilic	thermophileⓘ	no	95.99	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of the biosynthesis gene cluster for the pyrrole polyether antibiotic calcimycin (A23187) in Streptomyces chartreusis NRRL 3882.	Wu Q, Liang J, Lin S, Zhou X, Bai L, Deng Z, Wang Z.	Antimicrob Agents Chemother	10.1128/aac.01130-10	2011
	Construction and Effect Analysis of a Mixed Actinomycete Flora for Straw Returning to Albic Soil in Northeast China.	Gong X, Yu Y, Lv G, Hao Y, Wang L, Ma J, Jiang Y, Zou J, Li J, Wang Q.	Microorganisms	10.3390/microorganisms13020385	2025
	Prevalence and Correlates of Phenazine Resistance in Culturable Bacteria from a Dryland Wheat Field.	Perry EK, Newman DK.	Appl Environ Microbiol	10.1128/aem.02320-21	2022
	Atmospheric Precipitations, Hailstone and Rainwater, as a Novel Source of Streptomyces Producing Bioactive Natural Products.	Sarmiento-Vizcaino A, Espadas J, Martin J, Brana AF, Reyes F, Garcia LA, Blanco G.	Front Microbiol	10.3389/fmicb.2018.00773	2018
	Gut microbiome and diet contribute to ecological niche differentiation between argali (Ovis ammon hodgsoni) and blue sheep (Pseudois nayaur) on the Qinghai-Tibet Plateau.	Zhang M, Liang C, Li B, Jiang F, Song P, Gu H, Gao H, Cai Z, Zhang T.	Commun Biol	10.1038/s42003-025-08185-7	2025
	Chemical Diversity and Ecological Origins of Anti-MRSA Metabolites from Actinomycetota.	Fernandes SP, de Almeida LLC, de Souza TA, de Oliveira GD, Silva MDS, Rodrigues-Junior VDS, Alves HDS, Cibulski SP.	Antibiotics (Basel)	10.3390/antibiotics14111060	2025
	Chiral cobalt(ii) complex-promoted asymmetric para-Claisen rearrangement of allyl alpha-naphthol ethers.	Zeng H, Wang L, Su Z, Ying M, Lin L, Feng X.	Chem Sci	10.1039/d3sc05677e	2023
	Rewiring Escherichia coli to transform formate into methyl groups.	Mohr MKF, Satanowski A, Lindner SN, Erb TJ, Andexer JN.	Microb Cell Fact	10.1186/s12934-025-02674-4	2025
	Biosynthesis of Rishirilide B.	Schwarzer P, Wunsch-Palasis J, Bechthold A, Paululat T.	Antibiotics (Basel)	10.3390/antibiotics7010020	2018
Enzymology	Crystal Structure and Catalytic Mechanism of CouO, a Versatile C-Methyltransferase from Streptomyces rishiriensis.	Pavkov-Keller T, Steiner K, Faber M, Tengg M, Schwab H, Gruber-Khadjawi M, Gruber K.	PLoS One	10.1371/journal.pone.0171056	2017
Metabolism	Five gene products are required for assembly of the central pyrrole moiety of coumermycin A1.	Novotna J, Gust B, Kulik A, Spizek J, Heide L.	J Ind Microbiol Biotechnol	10.1007/s10295-013-1266-6	2013
	Structure and Function Analysis of Cultivated Meconopsis integrifolia Soil Microbial Community Based on High-Throughput Sequencing and Culturability.	Wang Y, Ma Q, Wang L, Hu J, Xue H, Han D, Xing Z, Ruan Z.	Biology (Basel)	10.3390/biology12020160	2023
Enzymology	Crystallization of the novel S-adenosyl-L-methionine-dependent C-methyltransferase CouO from Streptomyces rishiriensis and preliminary diffraction data analysis.	Lyskowski A, Tengg M, Steinkellner G, Schwab H, Gruber-Khadjawi M, Gruber K.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309112017137	2012
Phylogeny	Culturable Streptomyces spp. from high-altitude, oligotrophic North Western Himalaya: a comprehensive study on the diversity, bioactivity and insights into the proteome of potential species.	Bhat AM, Hussain A, Hassan QP, Bhat A.	FEMS Microbiol Ecol	10.1093/femsec/fiae026	2024
Metabolism	Two pathways for pyrrole formation in coumermycin A(1) biosynthesis: the central pyrrole moiety is formed from L-threonine.	Siebenberg S, Burkard N, Knuplesch A, Gust B, Grond S, Heide L.	Chembiochem	10.1002/cbic.201100494	2011
Metabolism	Biosynthesis of the nargenicin A1 pyrrole moiety from Nocardia sp. CS682.	Maharjan S, Aryal N, Bhattarai S, Koju D, Lamichhane J, Sohng JK.	Appl Microbiol Biotechnol	10.1007/s00253-011-3567-x	2012
	Discovery, isolation, heterologous expression and mode-of-action studies of the antibiotic polyketide tatiomicin from Amycolatopsis sp. DEM30355.	Kepplinger B, Mardiana L, Cowell J, Morton-Laing S, Dashti Y, Wills C, Marrs ECL, Perry JD, Gray J, Goodfellow M, Errington J, Probert MR, Clegg W, Bogaerts J, Herrebout W, Allenby NEE, Hall MJ.	Sci Rep	10.1038/s41598-022-18726-3	2022
	Secondary Metabolites of Actinomycetales as Potent Quorum Sensing Inhibitors Targeting Gram-Positive Pathogens: In Vitro and In Silico Study.	Desouky SE, Abu-Elghait M, Fayed EA, Selim S, Yousuf B, Igarashi Y, Abdel-Wahab BA, Mohammed Alsuhaibani A, Sonomoto K, Nakayama J.	Metabolites	10.3390/metabo12030246	2022
	Enhanced Rishirilide Biosynthesis by a Rare In-Cluster Phosphopantetheinyl Transferase in Streptomyces xanthophaeus.	Zhang S, Fan S, Zhu J, Zhou L, Yan X, Yang Z, Si T, Liu T.	Microbiol Spectr	10.1128/spectrum.03247-22	2022
Genetics	Exploring taxonomic and functional microbiome of Hawaiian stream and spring irrigation water systems using Illumina and Oxford Nanopore sequencing platforms.	Klair D, Dobhal S, Ahmad A, Hassan ZU, Uyeda J, Silva J, Wang KH, Kim S, Alvarez AM, Arif M.	Front Microbiol	10.3389/fmicb.2023.1039292	2023
Pathogenicity	Mass spectrometric pathway monitoring of secondary metabolites: systematic analysis of culture extracts of Streptomyces species.	Kammerer B, Kahlich R, Laufer S, Li SM, Heide L, Gleiter CH.	Anal Biochem	10.1016/j.ab.2004.08.018	2004
Metabolism	Methyltransferase genes in Streptomyces rishiriensis: new coumermycin derivatives from gene-inactivation experiments.	Li SM, Westrich L, Schmidt J, Kuhnt C, Heide L.	Microbiology (Reading)	10.1099/00221287-148-10-3317	2002
Phylogeny	Phylogenetic analysis of the salinipostin gamma-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity.	Creamer KE, Kudo Y, Moore BS, Jensen PR.	Microb Genom	10.1099/mgen.0.000568	2021
Metabolism	Lactonamycin, a new antimicrobial antibiotic produced by Streptomyces rishiriensis MJ773-88K4. I. Taxonomy, fermentation, isolation, physico-chemical properties and biological activities.	Matsumoto N, Tsuchida T, Maruyama M, Kinoshita N, Homma Y, Iinuma H, Sawa T, Hamada M, Takeuchi T, Heida N, Yoshioka T.	J Antibiot (Tokyo)	10.7164/antibiotics.52.269	1999
	Lactonamycin, a new antimicrobial antibiotic produced by Streptomyces rishiriensis MJ773-88K4. II. Structure determination.	Matsumoto N, Tsuchida T, Nakamura H, Sawa R, Takahashi Y, Naganawa H, Iinuma H, Sawa T, Takeuchi T, Shiro M.	J Antibiot (Tokyo)	10.7164/antibiotics.52.276	1999
Metabolism	Early Steps in the Biosynthetic Pathway of Rishirilide B.	Schwarzer P, Tsypik O, Zuo C, Alali A, Wunsch-Palasis J, Heitzler T, Derochefort J, Bernhardt M, Yan X, Paululat T, Bechthold A.	Molecules	10.3390/molecules25081955	2020
	Epoxide-Based Synthetic Approaches toward Polypropionates and Related Bioactive Natural Products.	Rodriguez-Berrios RR, Isbel SR, Bugarin A.	Int J Mol Sci	10.3390/ijms24076195	2023
Metabolism	Genetic analysis of the biosynthesis of the pyrrole and carbamoyl moieties of coumermycin A1 and novobiocin.	Xu H, Wang ZX, Schmidt J, Heide L, Li SM.	Mol Genet Genomics	10.1007/s00438-002-0759-1	2002
	Community Analysis of Root- and Tuber-Associated Bacteria in Field-Grown Potato Plants Harboring Different Resistance Levels against Common Scab.	Kobayashi A, Kobayashi YO, Someya N, Ikeda S.	Microbes Environ	10.1264/jsme2.me15109	2015
Genetics	Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium.	Malik A, Kim YR, Jang IH, Hwang S, Oh DC, Kim SB.	BMC Genomics	10.1186/s12864-020-6468-5	2020
Metabolism	Biosynthetic investigations of lactonamycin and lactonamycin z: cloning of the biosynthetic gene clusters and discovery of an unusual starter unit.	Zhang X, Alemany LB, Fiedler HP, Goodfellow M, Parry RJ.	Antimicrob Agents Chemother	10.1128/aac.00717-07	2008
	Potentiation of mitomycin C, 6-mercaptopurine, bleomycin, cis-diamminedichloroplatinum and 5-fluorouracil by mycotrienins and mycotrienols.	Kuwano M, Ikezaki K, Mamizuka K, Komiyama S, Seto H, Otake N, Sugita M, Yamaguchi T, Kishiye T, Fukawa H.	Gan		1983
	Total synthesis of (+)-rishirilide B: development and application of general processes for enantioselective oxidative dearomatization of resorcinol derivatives.	Mejorado LH, Pettus TR.	J Am Chem Soc	10.1021/ja062987w	2006
Metabolism	Potentiation of Helicobacter pylori CagA protein virulence through homodimerization.	Nagase L, Murata-Kamiya N, Hatakeyama M.	J Biol Chem	10.1074/jbc.m111.258673	2011
	Practical 4'-phosphopantetheine active site discovery from proteomic samples.	Meier JL, Patel AD, Niessen S, Meehan M, Kersten R, Yang JY, Rothmann M, Cravatt BF, Dorrestein PC, Burkart MD, Bafna V.	J Proteome Res	10.1021/pr100953b	2011
Metabolism	Influence of cobalt on fermentative methylation.	Claridge CA, Rossomano VZ, Buono NS, Gourevitch A, Lein J.	Appl Microbiol	10.1128/am.14.2.280-283.1966	1966
Metabolism	Involvement of a cytochrome P450 monooxygenase in thaxtomin A biosynthesis by Streptomyces acidiscabies.	Healy FG, Krasnoff SB, Wach M, Gibson DM, Loria R.	J Bacteriol	10.1128/jb.184.7.2019-2029.2002	2002
Enzymology	Identification of a topoisomerase IV in actinobacteria: purification and characterization of ParYR and GyrBR from the coumermycin A1 producer Streptomyces rishiriensis DSM 40489.	Schmutz E, Hennig S, Li SM, Heide L	Microbiology (Reading)	10.1099/mic.0.26867-0	2004
Enzymology	An unusual amide synthetase (CouL) from the coumermycin A1 biosynthetic gene cluster from Streptomyces rishiriensis DSM 40489.	Schmutz E, Steffensky M, Schmidt J, Porzel A, Li SM, Heide L	Eur J Biochem	10.1046/j.1432-1033.2003.03830.x	2003
Enzymology	Identification of the coumermycin A(1) biosynthetic gene cluster of Streptomyces rishiriensis DSM 40489.	Wang ZX, Li SM, Heide L	Antimicrob Agents Chemother	10.1128/AAC.44.11.3040-3048.2000	2000
	Streptomyces coriariae sp. nov., a novel streptomycete isolated from actinorhizal nodules of Coriaria intermedia.	Berckx F, Bandong CM, Wibberg D, Kalinowski J, Willemse J, Brachmann A, Simbahan J, Pawlowski K.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005603	2022
Phylogeny	Streptomyces phaeolivaceus sp. nov. and Streptomyces broussonetiae sp. nov., isolated from the leaves and rhizosphere soil of Broussonetia papyrifera.	Mo P, Liu J, Zhao Y, Xu Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004556	2020

References

#9594	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40489
#19464	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
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Streptomyces rishiriensis (DSM 40489, ATCC 14812, CBS 708.72)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003112535

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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