Name: Streptomyces rochei X-15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15553

Type strain:

Species: Streptomyces rochei

Strain Designation: X-15

Culture col. no.: DSM 40231, ATCC 10739, ATCC 19245, ATCC 23956, CBS 224.46, CBS 939.68, CUB 519, ETH 13471, ETH 20727, IFO 12908, IMET 41386, IMRU 3602, ISP 5231, JCM 4074, JCM 4668, KCC S-0074, KCC S-0668, NBRC 12908, NRRL 3533, NRRL B-1559, NRRL B-2410, PSA 83, RIA 1171, BCRC 13716, CCUG 11115, CECT 3329, CGMCC 4.1425, HAMBI 2114, ICMP 490, ICMP 918, IFM 1188, KACC 20022, KCTC 19060, LMG 19313, VKM Ac-997, VTT E-991423

Strain history: KCC S-0074 <-- Y. Okami <-- ATCC 10739 <-- J. Berger X-15.

NCBI tax ID(s): 1928 (species)

SI-ID 35281

LMG 19313, ATCC 10739, ATCC 19245, ATCC 23956, CCUG 11115, IFO 12908, IMET 41386, JCM 4074, JCM 4668, NRRL B-1559, NRRL B-2410, NRRL B-3533, VKM Ac-997, NRRL 3533, CBS 224.46, AS 4.1425, CECT 3329, NBRC 12908, HAMBI 2114, BCRC 15102, CCRC 15102, ICMP 490, ICMP 918, KCTC 19060, KACC 20022, BCRC 13716, CCRC 13716, CGMCC 4.1425, VTT E-991423, CBS 939.68, DSM 40231

Other strains from Streptomyces rochei

S. rochei K-5, DSM 40913
S. rochei 5E, ID 3818, DSM 41711
S. rochei 17G, DSM 41722
S. rochei 31A, DSM 41729
S. rochei 33B, DSM 41732
S. rochei 34B, ID 3846, DSM 41735
S. rochei 35A, ID 3848, DSM 41737
S. rochei JA 9767, JA 9769, DSM 46472, IMET ...
S. rochei STH00011(ZIMET), HKI 0011
S. rochei DSM 40916

Section

Streptomyces rochei X-15 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces rochei**
	Full Scientific Name (LPSN)	Streptomyces rochei Berger et al. 1953 (Approved Lists 1980)

	Synonym	Streptomyces plicatus
	Synonym	Streptomyces enissocaesilis
	Synonym	Streptomyces geysiriensis
	Synonym	Streptomyces vinaceusdrappus

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9392]	growth	28 °C
[Ref.: #18564]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9392]	Temperature range	mesophilic
[Ref.: #18564]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Name of produced compound

borrelidin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18564]		NaCl		maximum	5	%

[Ref.: #18564]	Name of tolerated compound	Lysozyme
[Ref.: #18564]	Tolerance percentage	0.1

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18564]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18564]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18564]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18564]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18564]	mannitol ChEBI	+
[Ref.: #18564]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18564]	raffinose ChEBI	-
[Ref.: #18564]	rhamnose ChEBI	+
[Ref.: #18564]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18564]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	borrelidin ChEBI	yes
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18564]	123	+	+	+	+	+	-	+	+	-	not determinedn.d.	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9392]	Sample type/isolated from	soil
[Ref.: #9392]	Country	USSR
[Ref.: #9392]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence AB184237 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	12
Animal Samples	16
Plant Samples
Total Samples	28

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18564]	Biosafety level	1	German classification
[Ref.: #9392]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9392]	Streptomyces rochei gene for 16S rRNA, partial sequence, strain: NBRC 12908	AB184237	1472	ENA	1928 tax ID
[Ref.: #20218]	Streptomyces rochei gene for 16S ribosomal RNA, partial sequence, isolate: R1-2A/D104	AB922840	1458	ENA	1928 tax ID	*
[Ref.: #20218]	Streptomyces rochei strain NRRL B-1559 16S ribosomal RNA gene, partial sequence	EF626598	1487	ENA	1928 tax ID	*
[Ref.: #20218]	Streptococcus agalactiae DNA for 16S rRNA, strain ATCC 23956	AB002480	1312	ENA	1311 tax ID	*
[Ref.: #20218]	Streptomyces rochei partial 16S rRNA gene, strain DSM 40231T	AJ291995	869	ENA	1928 tax ID	*
[Ref.: #20218]	Streptomyces rochei gene for 16S ribosomal RNA, partial sequence, strain: JCM 4668	D44296	121	ENA	1928 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces rochei NRRL B-2410	GCA_002155895	scaffold	GenBank	1928 tax ID
[Ref.: #66792]	Streptomyces rochei NBRC 12908	2563366664	draft	JGI IMG/M	1928 tax ID	*
[Ref.: #66792]	Streptomyces eurythermus ATCC 23956	651717036	draft	JGI IMG/M	42237 tax ID	*
[Ref.: #66792]	Streptomyces eurythermus ATCC 23956	651717037	draft	JGI IMG/M	42237 tax ID	*

[Ref.: #67770]

GC-content

72.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #9392]

Culture collection no.

DSM 40231, ATCC 10739, ATCC 19245, ATCC 23956, CBS 224.46, CBS 939.68, CUB 519, ETH 13471, ETH 20727, IFO 12908, IMET 41386, IMRU 3602, ISP 5231, JCM 4074, JCM 4668, KCC S-0074, KCC S-0668, NBRC 12908, NRRL 3533, NRRL B-1559, NRRL B-2410, PSA 83, RIA 1171, BCRC 13716, CCUG 11115, CECT 3329, CGMCC 4.1425, HAMBI 2114, ICMP 490, ICMP 918, IFM 1188, KACC 20022, KCTC 19060, LMG 19313, VKM Ac-997, VTT E-991423

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SI-ID 35281

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces spinosus sp. nov. and Streptomyces shenzhenensis subsp. oryzicola subsp. nov. endophytic actinobacteria isolated from Jasmine rice and their genome mining for potential as antibiotic producers and plant growth promoters.	Kaewkla O, Sukpanoa S, Suriyachadkun C, Chamroensaksi N, Chumroenphat T, Franco CMM	Antonie Van Leeuwenhoek	10.1007/s10482-022-01741-9	2022	*
Genetics	Novel macrolactam compound produced by the heterologous expression of a large cryptic biosynthetic gene cluster of Streptomyces rochei IFO12908.	Hashimoto T, Kozone I, Hashimoto J, Ueoka R, Kagaya N, Fujie M, Sato N, Ikeda H, Shin-Ya K	J Antibiot (Tokyo)	10.1038/s41429-019-0265-x	2019	*
Pathogenicity	Purification and characterization of salvianolic acid B from Streptomyces sp. M4 possessing antifungal activity against fungal phytopathogens.	Sharma M, Manhas RK	Microbiol Res	10.1016/j.micres.2020.126478	2020	*
Phylogeny	Endophytic actinomycetes from spontaneous plants of Algerian Sahara: indole-3-acetic acid production and tomato plants growth promoting activity.	Goudjal Y, Toumatia O, Sabaou N, Barakate M, Mathieu F, Zitouni A	World J Microbiol Biotechnol	10.1007/s11274-013-1344-y	2013	*

References

#9392

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40231

#18564

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#84639

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35281.1 )

* These data were automatically processed and therefore are not curated

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