Name: Streptomyces resistomycificus Pürk 262
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15513

Type strain:

Species: Streptomyces resistomycificus

Strain Designation: Pürk 262

Culture col. no.: DSM 40133, ATCC 19804, CBS 556.68, ETH 23893, ETH 32680, IFO 12814, IMRU 3658, ISP 5133, JCM 4409, NBRC 12814, NRRL 2290, RIA 1083, BCRC 13755, NCIMB 9843, NRRL ISP-5133, PCM 2296, VKM Ac-1895

Strain history: KCC S-0409 <-- IFO 12814 <-- SAJ <-- ISP 5133 <-- P. Wilde Pürk 262.

NCBI tax ID(s): 67356 (species)

SI-ID 45638

ATCC 19804, IFO 12814, NRRL 2290, DSM 40133, JCM 4409, NRRL B-2290, CCRC 13755, NCIMB 9843, VKM Ac-1895, CBS 556.68, NBRC 12814, BCRC 13755, CGMCC 4.1304

Special Collections

Other strains from Streptomyces resistomycificus

Section

When using BacDive for research please cite our paper

Streptomyces resistomycificus Pürk 262 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces resistomycificus**
	Full Scientific Name (LPSN)	Streptomyces resistomycificus Lindenbein 1952 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	positive Confidence in %99

[Ref.: #21381]	Colony color	Olive brown
[Ref.: #21381]	Incubation period	10-14 days
[Ref.: #21381]	Cultivation medium used	ISP 2

[Ref.: #21381]	Colony color	Nut brown
[Ref.: #21381]	Incubation period	10-14 days
[Ref.: #21381]	Cultivation medium used	ISP 3

[Ref.: #21381]	Colony color	Fawn brown
[Ref.: #21381]	Incubation period	10-14 days
[Ref.: #21381]	Cultivation medium used	ISP 4

[Ref.: #21381]	Colony color	Grey brown
[Ref.: #21381]	Incubation period	10-14 days
[Ref.: #21381]	Cultivation medium used	ISP 5

[Ref.: #21381]	Colony color	Black brown
[Ref.: #21381]	Incubation period	10-14 days
[Ref.: #21381]	Cultivation medium used	ISP 7

[Ref.: #21381]	Multicellular complex forming ability	yes
[Ref.: #21381]	Multicellular complex name	Aerial Mycelium
[Ref.: #21381]	Multicellular complex color	Dusty grey
[Ref.: #21381]	Medium Name (multicellularity)	ISP 4

[Ref.: #21381]	Multicellular complex forming ability	no

[Ref.: #21381]	Multicellular complex forming ability	no
[Ref.: #21381]	Medium Name (multicellularity)	Suter without tyrosine

[Ref.: #21381]	Multicellular complex forming ability	no
[Ref.: #21381]	Medium Name (multicellularity)	ISP 2

[Ref.: #21381]	Multicellular complex forming ability	yes
[Ref.: #21381]	Multicellular complex name	Aerial Mycelium
[Ref.: #21381]	Multicellular complex color	Signal grey
[Ref.: #21381]	Medium Name (multicellularity)	ISP 3

[Ref.: #21381]	Multicellular complex forming ability	yes
[Ref.: #21381]	Multicellular complex name	Aerial Mycelium
[Ref.: #21381]	Multicellular complex color	Fawn brown
[Ref.: #21381]	Medium Name (multicellularity)	ISP 4

[Ref.: #21381]	Multicellular complex forming ability	yes
[Ref.: #21381]	Multicellular complex name	Aerial Mycelium
[Ref.: #21381]	Medium Name (multicellularity)	ISP 5

[Ref.: #21381]	Multicellular complex forming ability	no
[Ref.: #21381]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9335]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %90.762
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.1

[Ref.: #125438]	Ability of spore formation	yes Confidence in %91.64
[Ref.: #125439]	Ability of spore formation	yes Confidence in %94.5

[Ref.: #9335]	Name of produced compound	resistomycin
[Ref.: #20216]	Name of produced compound	Resistomycin = Croceomycin

	Metabolite	Utilization activity
[Ref.: #21381]	arabinose ChEBI	+
[Ref.: #21381]	cellulose ChEBI	-
[Ref.: #21381]	fructose ChEBI	+
[Ref.: #21381]	glucose ChEBI	+
[Ref.: #21381]	mannose ChEBI	+
[Ref.: #21381]	myo-inositol ChEBI	+
[Ref.: #21381]	raffinose ChEBI	+
[Ref.: #21381]	rhamnose ChEBI	+
[Ref.: #21381]	sucrose ChEBI	-
[Ref.: #21381]	xylose ChEBI	+

	Metabolite production	Metabolite	Production
[Ref.: #67770]		resistomycin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21381]	1022	not determinedn.d.	+	-	-	-	+	+	-	+	-	+	-	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9335]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces resistomycificus partial 16S rRNA gene, type strain DSM 40133	AJ310926	1448	GenBank ENA	67356 tax ID	*
[Ref.: #20218]	Streptomyces resistomycificus partial 16S rRNA gene, strain ISP 5133	AJ399472	1449	GenBank ENA	67356 tax ID	*
[Ref.: #20218]	Streptomyces resistomycificus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4409	D44124	120	GenBank ENA	67356 tax ID	*
[Ref.: #20218]	Streptomyces resistomycificus gene for 16S rRNA, partial sequence, strain: NBRC 12814	AB184166	1466	GenBank ENA	67356 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces resistomycificus NRRL ISP-5133	GCA_000716215	scaffold	GenBank ENA	67356 tax ID
[Ref.: #67770]	Streptomyces resistomycificus NRRL 2290	GCA_001270505	contig	GenBank ENA	67356 tax ID
[Ref.: #67770]	Streptomyces resistomycificus DSM 40133	GCA_001514265	scaffold	GenBank ENA	67356 tax ID
[Ref.: #66792]	Streptomyces resistomycificus strain DSM 40133	67356.6	wgs	PATRIC	67356 tax ID	*
[Ref.: #66792]	Streptomyces resistomycificus strain NRRL 2290	67356.5	wgs	PATRIC	67356 tax ID	*
[Ref.: #66792]	Streptomyces resistomycificus DSM 40133	2806310739	draft	JGI IMG/M	67356 tax ID	*

[Ref.: #67770]	GC-content	73.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	71 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces resistomycificus strain DSM 40133 PATRIC: 67356.6
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	89.906	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.946	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	91.64	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	90.762	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	87.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces resistomycificus NRRL ISP-5133 NCBI: GCA_000716215
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	94.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	89.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.1

Availability in culture collections External links

[Ref.: #9335]

Culture collection no.

DSM 40133, ATCC 19804, CBS 556.68, ETH 23893, ETH 32680, IFO 12814, IMRU 3658, ISP 5133, JCM 4409, NBRC 12814, NRRL 2290, RIA 1083, BCRC 13755, NCIMB 9843, NRRL ISP-5133, PCM 2296, VKM Ac-1895

[Ref.: #84599]

SI-ID 45638

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces ziwulingensis sp. nov., isolated from grassland soil.	Lin YB, Wang XY, Wang TT, An SS, Shi P, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.043026-0	2012	*
Phylogeny	Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001236	2016	*
Phylogeny	Streptomyces plumbiresistens sp. nov., a lead-resistant actinomycete isolated from lead-polluted soil in north-west China.	Guo JK, Lin YB, Zhao ML, Sun R, Wang TT, Tang M, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.004713-0	2009	*
Phylogeny	Streptomyces roseoalbus sp. nov., an actinomycete isolated from soil in Yunnan, China.	Xu LH, Jiang Y, Li WJ, Wen ML, Li MG, Jiang CL	Antonie Van Leeuwenhoek	10.1007/s10482-004-3720-y	2005	*

References

#9335

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40133

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#21381

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#84599

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45638.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Streptomyces resistomycificus strain DSM 40133

Streptomyces resistomycificus NRRL ISP-5133

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