Streptomyces racemochromogenes (DSM 40194, ATCC 23954, CBS 937.68)

Name: Streptomyces racemochromogenes (DSM 40194, ATCC 23954, CBS 937.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15508

Type strain

Strain Designation 229

Culture col. no. DSM 40194 ATCC 23954 CBS 937.68 IFO 12906 ISP 5194 8 more

NCBI tax ID(s) 67353

Special Collections DSMZ JCM

History DSMZ <- E.B. Shirling, ISP <- M. Oda, Meiji Seika Co., 229 JCM <-- KCC S-0407 <-- IFO 12906 <-- SAJ <-- ISP 5194 <-- Meiji Seika Kaisha, Ltd.; 229.

Links

Streptomyces racemochromogenes 229 is a bacterium that produces antibiotic compounds.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 38300

ATCC 23954,IFO 12906,DSM 40194,JCM 4407,CCRC 12318,NRRL B-5430,VKM Ac-1206,CBS 937.68,NBRC 12906,BCRC 12318,CGMCC 4.1998

@ref 20215

Last LPSN update 2026-05-29 08:28:33

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces racemochromogenes

Full scientific name Streptomyces racemochromogenes Sugai 1956 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces racemochromogenes** (1)	Type strain
15370	S. racemochromogenes K-300, DSM 41581, ATCC 25233, NRRL B-2036

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	97.341

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9255	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9255	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.585

Spore formation

@ref	Spore formation	Confidence
125439		93.509

Compound production

@ref	Compound
9255	racemomycine complex
9255	streptothricin complex
67770	Racemomycin

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence EU035296 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	230
Soil Samples	4236
Animal Samples	299
Plant Samples	1307
Total Samples	6072

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9255	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953521v1 assembly for Streptomyces racemochromogenes JCM 4407	contig	GCA_039535215	67353	78.8
124043	ASM4243082v1 assembly for Streptomyces racemochromogenes JCM 4407	scaffold	GCA_042430825	67353	67.67

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces racemochromogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4407	D44122	120	67353
20218	Streptomyces racemochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 12906	AB184235	1459	67353
20218	Streptomyces racemochromogenes strain NRRL B-5430 16S ribosomal RNA gene, partial sequence	DQ026656	1497	67353
20218	Streptomyces sp. HNS2-2 16S ribosomal RNA gene, partial sequence	EU035296	1074	458141
124043	Streptomyces racemochromogenes strain DSM 40194 16S ribosomal RNA gene, partial sequence.	KP082880	1518	1620694
124043	Streptomyces racemochromogenes strain DSM 40194 16S ribosomal RNA gene, partial sequence.	KP082881	1517	1620692
124043	Streptomyces racemochromogenes strain DSM 40194 16S ribosomal RNA gene, partial sequence.	KP082882	1518	1620693
124043	Streptomyces racemochromogenes strain DSM 40194 16S ribosomal RNA gene, partial sequence.	KP082883	1385	67353
124043	Streptomyces racemochromogenes strain JCM 4407 16S ribosomal RNA gene, partial sequence.	MT760542	1375	67353

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953521v1 assembly for Streptomyces racemochromogenes JCM 4407
NCBI: GCA_039535215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.59	no
125439	gram_stain	BacteriaNetⓘ	positive	97.34	no
125439	spore_formation	BacteriaNetⓘ	yes	93.51	no
125439	motility	BacteriaNetⓘ	no	89.81	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Plant-Growth Promotion and Biocontrol Properties of Three Streptomyces spp. Isolates to Control Bacterial Rice Pathogens.	Suarez-Moreno ZR, Vinchira-Villarraga DM, Vergara-Morales DI, Castellanos L, Ramos FA, Guarnaccia C, Degrassi G, Venturi V, Moreno-Sarmiento N.	Front Microbiol	10.3389/fmicb.2019.00290	2019
Genetics	Whole genome analysis of Streptomyces sp. RerS4, a Rehmannia glutinosa rhizosphere microbe producing a new lipopeptide.	He H, Huang J, Zhao Z, Du P, Li J, Xin J, Xu H, Feng W, Zheng X.	Heliyon	10.1016/j.heliyon.2023.e19543	2023
	Biocontrol Potential of Endophytic Actinobacteria against Fusarium solani, the Causal Agent of Sudden Decline Syndrome on Date Palm in the UAE.	Alblooshi AA, Purayil GP, Saeed EE, Ramadan GA, Tariq S, Altaee AS, El-Tarabily KA, AbuQamar SF.	J Fungi (Basel)	10.3390/jof8010008	2021
Metabolism	Bioconversion of phosphatidylserine by phospholipase D from Streptomyces racemochromogenes in a microaqueous water-immiscible organic solvent.	Chen S, Xu L, Li Y, Hao N, Yan M.	Biosci Biotechnol Biochem	10.1271/bbb.130388	2013
Metabolism	Large-scale production of phospholipase D from Streptomyces racemochromogenes and its application to soybean lecithin modification.	Nakazawa Y, Sagane Y, Sakurai S, Uchino M, Sato H, Toeda K, Takano K.	Appl Biochem Biotechnol	10.1007/s12010-011-9370-4	2011
	Characterization of Antibacterial Strains against Kiwifruit Bacterial Canker Pathogen.	Kim MJ, Chae DH, Cho G, Kim DR, Kwak YS.	Plant Pathol J	10.5423/ppj.oa.05.2019.0154	2019
	Microbial-Based Biofungicides Mitigate the Damage Caused by Fusarium oxysporum f. sp. cubense Race 1 and Improve the Physiological Performance in Banana.	Izquierdo-Garcia LF, Carmona-Gutierrez SL, Moreno-Velandia CA, Villarreal-Navarrete ADP, Burbano-David DM, Quiroga-Mateus RY, Gomez-Marroquin MR, Rodriguez-Yzquierdo GA, Betancourt-Vasquez M.	J Fungi (Basel)	10.3390/jof10060419	2024
	Development of a thiostrepton-free system for stable production of PLD in Streptomyces lividans SBT5.	Wang J, Zhu H, Shang H, Guo B, Zhang M, Wang F, Zhang L, Xu J, Wang H.	Microb Cell Fact	10.1186/s12934-022-01992-1	2022
	Study on the mechanism of efficient extracellular expression of toxic streptomyces phospholipase D in Brevibacillus choshinensis under Mg²⁺ stress.	Chen S, Xiong W, Zhao X, Luo W, Yan X, Lu Y, Chen C, Ling X.	Microb Cell Fact	10.1186/s12934-022-01770-z	2022
	Cross-Bioaugmentation Among Four Remote Soil Samples Contaminated With Oil Exerted Just Inconsistent Effects on Oil-Bioremediation.	Al-Mailem DM, Kansour MK, Radwan SS.	Front Microbiol	10.3389/fmicb.2019.02827	2019
Enzymology	Streptomycetes: Attractive Hosts for Recombinant Protein Production.	Berini F, Marinelli F, Binda E.	Front Microbiol	10.3389/fmicb.2020.01958	2020
Phylogeny	Streptomyces yangpuensis sp. nov., isolated from soil.	Tang B, Yu Y, Zhi X, Yang L, Cen X, Zhao G, Ding X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000861	2015

References

#9255	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40194
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces racemochromogenes (DSM 40194, ATCC 23954, CBS 937.68)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039535215

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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