Campylobacter lari subsp. concheus (CCUG 55786, LMG 21009)

Name: Campylobacter lari subsp. concheus (CCUG 55786, LMG 21009)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 154934

Type strain

Culture col. no. CCUG 55786 LMG 21009

NCBI tax ID(s) 488545

Special Collections CCUG

Links

Campylobacter lari subsp. concheus CCUG 55786 is a microaerophile, mesophilic prokaryote that was isolated from Shellfish.

microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 128244

LMG 21009,CCUG 55786

@ref 20215

Last LPSN update 2026-02-09 11:37:30

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter lari subsp. concheus

Full scientific name Campylobacter lari subsp. concheus Debruyne et al. 2009

BacDive ID	Other strains from **Campylobacter lari subsp. concheus** (2)	Type strain
154936	C. lari subsp. concheus CCUG 55788, LMG 23917
154937	C. lari subsp. concheus CCUG 55789, LMG 11760

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.3
125438	negative	97.477

Colony morphology

60728

Incubation period3 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
60728	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60728	microaerophile
125439	obligate aerobe	91.1

Spore formation

@ref	Spore formation	Confidence
125438		94.673

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fishes

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
60728	Shellfish	1993	Netherlands	NLD	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM824502v1 assembly for Campylobacter lari subsp. concheus LMG 21009	complete	GCA_008245025	488545.3	488545	94.22
66792	ASM880200v1 assembly for Campylobacter lari subsp. concheus CCUG 55786	contig	GCA_008802005	488545.4	488545	67.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Campylobacter lari subsp. concheus partial 16S ribosomal RNA gene, type strain LMG 21009T	AM922330	1501		488545
124043	Campylobacter lari subsp. concheus strain CCUG 55786 16S ribosomal RNA gene, partial sequence.	JX912521	1436		488545

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter lari subsp. concheus LMG 21009
NCBI: GCA_008245025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.70	no
125439	motility	BacteriaNetⓘ	no	51.60	no
125439	gram_stain	BacteriaNetⓘ	negative	97.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter lari subsp. concheus LMG 21009
NCBI: GCA_008245025.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	no
125438	anaerobic	anaerobicⓘ	no	85.23	yes
125438	aerobic	aerobicⓘ	no	85.32	yes
125438	spore-forming	spore-formingⓘ	no	94.67	no
125438	thermophilic	thermophileⓘ	no	87.27	yes
125438	flagellated	motile2+ⓘ	yes	61.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov.	Debruyne L, On SL, De Brandt E, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.000851-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#60728	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55786
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter lari subsp. concheus (CCUG 55786, LMG 21009)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008245025

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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