We are hiring!

Strain identifier

BacDive ID: 154934

Type strain: Yes

Species: Campylobacter lari subsp. concheus

NCBI tax ID(s): 488545 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 7.1 (current version)

General

@ref: 60728

BacDive-ID: 154934

keywords: genome sequence, Bacteria, microaerophile, mesophilic

description: Campylobacter lari subsp. concheus CCUG 55786 is a microaerophile, mesophilic bacterium that was isolated from Shellfish.

NCBI tax id

  • NCBI tax id: 488545
  • Matching level: subspecies

doi: 10.13145/bacdive154934.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter lari subsp. concheus
  • full scientific name: Campylobacter lari subsp. concheus Debruyne et al. 2009

@ref: 60728

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter lari subsp. concheus

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.465

colony morphology

  • @ref: 60728
  • incubation period: 3 days

Culture and growth conditions

culture temp

  • @ref: 60728
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60728
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.116

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 89.813

Isolation, sampling and environmental information

isolation

  • @ref: 60728
  • sample type: Shellfish
  • sampling date: 1993
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter lari subsp. concheus LMG 21009GCA_008245025completencbi488545
66792Campylobacter lari subsp. concheus CCUG 55786GCA_008802005contigncbi488545
66792Campylobacter lari subsp. concheus strain CCUG 55786488545.4wgspatric488545
66792Campylobacter lari subsp. concheus strain LMG 21009488545.3completepatric488545
66792Pantoea brenneri IIF5SW-P5GCA_013403335contigpatric472694
66792Raoultella sp. 18111 18111_WYM25_C4GCA_902706385contigpatric2681443

External links

@ref: 60728

culture collection no.: CCUG 55786, LMG 21009

literature

  • topic: Phylogeny
  • Pubmed-ID: 19406805
  • title: Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov.
  • authors: Debruyne L, On SL, De Brandt E, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000851-0
  • year: 2009
  • mesh: Animals, Bacterial Proteins/chemistry/genetics, Bacterial Typing Techniques, Bivalvia/*microbiology, Campylobacter/*classification/genetics/isolation & purification/physiology, Campylobacter Infections/*microbiology, Campylobacter lari/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Diarrhea/microbiology, Genes, rRNA, Heat-Shock Proteins/genetics, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Shellfish/*microbiology, Species Specificity
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
60728Curators of the CCUGhttps://www.ccug.se/strain?id=55786Culture Collection University of Gothenburg (CCUG) (CCUG 55786)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes