Strain identifier
BacDive ID: 154934
Type strain: 
Species: Campylobacter lari subsp. concheus
NCBI tax ID(s): 488545 (subspecies)
version 8.1 (current version)
General
@ref: 60728
BacDive-ID: 154934
keywords: genome sequence, Bacteria, microaerophile, mesophilic, motile
description: Campylobacter lari subsp. concheus CCUG 55786 is a microaerophile, mesophilic, motile bacterium that was isolated from Shellfish.
NCBI tax id
- NCBI tax id: 488545
- Matching level: subspecies
doi: 10.13145/bacdive154934.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter lari subsp. concheus
- full scientific name: Campylobacter lari subsp. concheus Debruyne et al. 2009
@ref: 60728
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter lari subsp. concheus
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.696 | |
| 69480 | 99.987 | negative |
colony morphology
- @ref: 60728
- incubation period: 3 days
Culture and growth conditions
culture temp
- @ref: 60728
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 60728
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.999 |
| 69481 | no | 98 |
Isolation, sampling and environmental information
isolation
- @ref: 60728
- sample type: Shellfish
- sampling date: 1993
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Campylobacter lari subsp. concheus LMG 21009 | GCA_008245025 | complete | ncbi | 488545 |
| 66792 | Campylobacter lari subsp. concheus CCUG 55786 | GCA_008802005 | contig | ncbi | 488545 |
| 66792 | Campylobacter lari subsp. concheus strain CCUG 55786 | 488545.4 | wgs | patric | 488545 |
| 66792 | Campylobacter lari subsp. concheus strain LMG 21009 | 488545.3 | complete | patric | 488545 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| motile | yes | 87.671 | no |
| flagellated | yes | 59.619 | no |
| gram-positive | no | 98.927 | no |
| anaerobic | no | 83.717 | no |
| aerobic | no | 98.174 | no |
| halophile | no | 79.398 | no |
| spore-forming | no | 96.873 | no |
| glucose-util | no | 85.354 | no |
| thermophile | no | 76.631 | yes |
| glucose-ferment | no | 85.199 | no |
External links
@ref: 60728
culture collection no.: CCUG 55786, LMG 21009
straininfo link
- @ref: 108460
- straininfo: 128244
literature
- topic: Phylogeny
- Pubmed-ID: 19406805
- title: Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov.
- authors: Debruyne L, On SL, De Brandt E, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000851-0
- year: 2009
- mesh: Animals, Bacterial Proteins/chemistry/genetics, Bacterial Typing Techniques, Bivalvia/*microbiology, Campylobacter/*classification/genetics/isolation & purification/physiology, Campylobacter Infections/*microbiology, Campylobacter lari/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Diarrhea/microbiology, Genes, rRNA, Heat-Shock Proteins/genetics, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Shellfish/*microbiology, Species Specificity
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 60728 | Curators of the CCUG | https://www.ccug.se/strain?id=55786 | Culture Collection University of Gothenburg (CCUG) (CCUG 55786) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 108460 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID128244.1 |