Campylobacter lari subsp. concheus (CCUG 55789, LMG 11760)

Name: Campylobacter lari subsp. concheus (CCUG 55789, LMG 11760)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 154937

Type strain

Culture col. no. CCUG 55789 LMG 11760

NCBI tax ID(s) 1031536 488545

Special Collections CCUG

Links

Campylobacter lari subsp. concheus CCUG 55789 is a microaerophile bacterium that was isolated from Human infection.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 9851

LMG 11760,CCUG 55789

@ref 20215

Last LPSN update 2026-02-09 11:37:30

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter lari subsp. concheus

Full scientific name Campylobacter lari subsp. concheus Debruyne et al. 2009

BacDive ID	Other strains from **Campylobacter lari subsp. concheus** (2)	Type strain
154934	C. lari subsp. concheus CCUG 55786, LMG 21009 (type strain)
154936	C. lari subsp. concheus CCUG 55788, LMG 23917

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.477
125439	negative	98.6

Colony morphology

60731

Incubation period2 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
60731	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60731	microaerophile
125439	obligate aerobe	95.3

Spore formation

@ref	Spore formation	Confidence
125438		95.173
125439		90.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Infection	#Disease
#Infection	#Patient

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
60731	Human infection	1990	Canada	CAN	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM81622v1 assembly for Campylobacter lari subsp. concheus LMG 11760	complete	GCA_000816225	1031536.3	2636415659	1031536	97.86

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Campylobacter lari subsp. concheus strain LMG 11760 16S ribosomal RNA gene, partial sequence.	AF550633	1418		488545

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter lari subsp. concheus LMG 11760
NCBI: GCA_000816225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	motility	BacteriaNetⓘ	no	57.00	no
125439	spore_formation	BacteriaNetⓘ	no	90.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter lari subsp. concheus LMG 11760 LMG 11760
NCBI: GCA_000816225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	no
125438	anaerobic	anaerobicⓘ	no	84.12	no
125438	aerobic	aerobicⓘ	no	83.65	yes
125438	spore-forming	spore-formingⓘ	no	95.17	no
125438	thermophilic	thermophileⓘ	no	87.27	yes
125438	flagellated	motile2+ⓘ	yes	62.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic Diversity of Campylobacter lari Group Isolates from Europe and Australia in a One Health Context.	Gourmelon M, Boukerb AM, Nabi N, Banerji S, Joensen KG, Serghine J, Cormier A, Megraud F, Lehours P, Alter T, Ingle DJ, Kirk MD, Nielsen EM.	Appl Environ Microbiol	10.1128/aem.01368-22	2022
Genetics	Comparative genomics of the Campylobacter lari group.	Miller WG, Yee E, Chapman MH, Smith TP, Bono JL, Huynh S, Parker CT, Vandamme P, Luong K, Korlach J.	Genome Biol Evol	10.1093/gbe/evu249	2014
Enzymology	Biological roles of the O-methyl phosphoramidate capsule modification in Campylobacter jejuni.	van Alphen LB, Wenzel CQ, Richards MR, Fodor C, Ashmus RA, Stahl M, Karlyshev AV, Wren BW, Stintzi A, Miller WG, Lowary TL, Szymanski CM.	PLoS One	10.1371/journal.pone.0087051	2014
Phylogeny	Identification of distinct Campylobacter lari genogroups by amplified fragment length polymorphism and protein electrophoretic profiles.	Duim B, Wagenaar JA, Dijkstra JR, Goris J, Endtz HP, Vandamme PA.	Appl Environ Microbiol	10.1128/aem.70.1.18-24.2004	2004
Phylogeny	Rapid identification of thermotolerant Campylobacter jejuni, Campylobacter coli, Campylobacter lari, and Campylobacter upsaliensis from various geographic locations by a GTPase-based PCR-reverse hybridization assay.	van Doorn LJ, Verschuuren-van Haperen A, Burnens A, Huysmans M, Vandamme P, Giesendorf BA, Blaser MJ, Quint WG.	J Clin Microbiol	10.1128/jcm.37.6.1790-1796.1999	1999
	Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus.	Miller WG, On SL, Wang G, Fontanoz S, Lastovica AJ, Mandrell RE.	J Clin Microbiol	10.1128/jcm.43.5.2315-2329.2005	2005
Phylogeny	Campylobacter ornithocola sp. nov., a novel member of the Campylobacter lari group isolated from wild bird faecal samples.	Caceres A, Munoz I, Iraola G, Diaz-Viraque F, Collado L.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001822	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#60731	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55789
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter lari subsp. concheus (CCUG 55789, LMG 11760)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000816225

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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