Name: Streptomyces poonensis DSM 40596
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15479

Type strain:

Species: Streptomyces poonensis

Culture col. no.: DSM 40596, ATCC 15723, CBS 295.66, CBS 786.72, IFO 13485, IMRU 3752, ISP 5596, NBRC 13485, RIA 1446, JCM 4815, BCRC 13311, CGMCC 4.1097, HAMBI 987, IFO 12556, IMET 43406, JCM 3071, JCM 3079, LMG 19326, NBRC 12556, NRRL B-2319, NRRL B-2951, PCM 2246, VKM Ac-1715

Strain history: KCC S-0815 <-- IFO 13485 <-- SAJ <-- ISP 5596 <-- ATCC 15723 <-- IMRU 3752 <-- M. J. Thirumalachar.

NCBI tax ID(s): 68255 (species)

SI-ID 63614

LMG 19326, ATCC 15723, CCRC 13311, DSM 40596, IFO 12556, IFO 13485, IMET 43406, JCM 3071, JCM 3079, JCM 4815, NRRL B-2319, NRRL B-2951, VKM Ac-1715, CBS 295.66, NBRC 12556, NBRC 13485, BCRC 13311, HAMBI 987, CGMCC 4.1097, CBS 786.72, AS 4.1097

Special Collections

Other strains from Streptomyces poonensis

Section

Streptomyces poonensis DSM 40596 is a spore-forming bacterium that builds an aerial mycelium.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces poonensis**
	Full Scientific Name (LPSN)	Streptomyces poonensis (Thirumalachar 1960) Pridham 1970 (Approved Lists 1980)

Synonym

Chainia poonensis

Information on morphological and physiological properties Morphology

[Ref.: #18660]	Colony color	Colourless
[Ref.: #18660]	Incubation period	10-14 days
[Ref.: #18660]	Cultivation medium used	ISP 2

[Ref.: #18660]	Colony color	Colourless
[Ref.: #18660]	Incubation period	10-14 days
[Ref.: #18660]	Cultivation medium used	ISP 3

[Ref.: #18660]	Colony color	Colourless
[Ref.: #18660]	Incubation period	10-14 days
[Ref.: #18660]	Cultivation medium used	ISP 4

[Ref.: #18660]	Colony color	Colourless
[Ref.: #18660]	Incubation period	10-14 days
[Ref.: #18660]	Cultivation medium used	ISP 5

[Ref.: #18660]	Colony color	Colourless
[Ref.: #18660]	Incubation period	10-14 days
[Ref.: #18660]	Cultivation medium used	ISP 6

[Ref.: #18660]	Colony color	Colourless
[Ref.: #18660]	Incubation period	10-14 days
[Ref.: #18660]	Cultivation medium used	ISP 7

[Ref.: #18660]	Multicellular complex forming ability	yes
[Ref.: #18660]	Multicellular complex name	Aerial Mycelium
[Ref.: #18660]	Multicellular complex color	White/sparse
[Ref.: #18660]	Medium Name (multicellularity)	ISP 2

[Ref.: #18660]	Multicellular complex forming ability	yes
[Ref.: #18660]	Multicellular complex name	Aerial Mycelium
[Ref.: #18660]	Multicellular complex color	White/sparse
[Ref.: #18660]	Medium Name (multicellularity)	ISP 3

[Ref.: #18660]	Multicellular complex forming ability	yes
[Ref.: #18660]	Multicellular complex name	Aerial Mycelium
[Ref.: #18660]	Multicellular complex color	White/sparse
[Ref.: #18660]	Medium Name (multicellularity)	ISP 4

[Ref.: #18660]	Multicellular complex forming ability	yes
[Ref.: #18660]	Multicellular complex name	Aerial Mycelium
[Ref.: #18660]	Multicellular complex color	White/sparse
[Ref.: #18660]	Medium Name (multicellularity)	ISP 5

[Ref.: #18660]	Multicellular complex forming ability	no
[Ref.: #18660]	Medium Name (multicellularity)	ISP 6

[Ref.: #18660]	Multicellular complex forming ability	no
[Ref.: #18660]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9672]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9672]

Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9672]	growth	28 °C
[Ref.: #18660]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #18660]	Spore description	Formation of spore chains (spirales)(Sp), spore surface smooth
[Ref.: #18660]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.264
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #20216]

Observation

Antifungal and antibacterial activity

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18660]	178	-	-	-	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB184437 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1
Soil Samples	34
Animal Samples	5
Plant Samples
Total Samples	40

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18660]	Biosafety level	1	German classification
[Ref.: #9672]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces poonensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4815	D44382	121	GenBank ENA	68255 tax ID	*
[Ref.: #20218]	Streptomyces poonensis gene for 16S rRNA, partial sequence, strain: NBRC 12556	AB184103	1475	GenBank ENA	68255 tax ID	*
[Ref.: #20218]	Streptomyces poonensis gene for 16S rRNA, partial sequence, strain: NBRC 13485	AB184437	1473	GenBank ENA	68255 tax ID	*
[Ref.: #20218]	Streptomyces poonensis strain NRRL B-2319 16S ribosomal RNA gene, partial sequence	DQ445792	1530	GenBank ENA	68255 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces poonensis JCM 4815	GCA_014650915	scaffold	GenBank ENA	68255 tax ID	*
[Ref.: #66792]	Streptomyces poonensis strain JCM 4815	68255.3	wgs	PATRIC	68255 tax ID	*

[Ref.: #67770]

GC-content

71.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces poonensis JCM 4815 NCBI: GCA_014650915.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces poonensis JCM 4815 NCBI: GCA_014650915.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.988	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.011	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.133	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.264	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #9672]

Culture collection no.

DSM 40596, ATCC 15723, CBS 295.66, CBS 786.72, IFO 13485, IMRU 3752, ISP 5596, NBRC 13485, RIA 1446, JCM 4815, BCRC 13311, CGMCC 4.1097, HAMBI 987, IFO 12556, IMET 43406, JCM 3071, JCM 3079, LMG 19326, NBRC 12556, NRRL B-2319, NRRL B-2951, PCM 2246, VKM Ac-1715

[Ref.: #84566]

SI-ID 63614

References

#9672

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40596

#18660

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84566

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID63614.1 )

* These data were automatically processed and therefore are not curated

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