Name: Streptomyces omiyaensis DSM 40552
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15451

Type strain:

Species: Streptomyces omiyaensis

Culture col. no.: DSM 40552, ATCC 27454, CBS 750.72, IFO 13449, ISP 5552, JCM 4806, NBRC 13449, NRRL B-1587, RIA 1410, NIHJ 102, BCRC 11897, CGMCC 4.1987, IMET 43362, VKM Ac-1903

Strain history: KCC S-0806 <-- IFO 13449 <-- SAJ <-- ISP 5552 <-- NRRL B-1587 <-- Y. Okami (NIHJ 102).

NCBI tax ID(s): 68247 (species)

SI-ID 297033

ATCC 27454, IFO 13449, NRRL B-1587, DSM 40552, JCM 4806, CCRC 11897, IMET 43362, VKM Ac-1903, CBS 750.72, NBRC 13449, BCRC 11897, CGMCC 4.1987

Special Collections

DSMZ
JCM

Other strains from Streptomyces omiyaensis

Section

Streptomyces omiyaensis DSM 40552 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces omiyaensis**
	Full Scientific Name (LPSN)	Streptomyces omiyaensis Umezawa and Okami 1950 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9635]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9635]

Culture medium growth

[Ref.: #9635]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9635]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9635]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #9635]	Name of produced compound	chloramphenicol
[Ref.: #20216]	Name of produced compound	Chloramphenicol

	Metabolite production	Metabolite	Production
[Ref.: #67770]		chloramphenicol ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9635]	Sample type/isolated from	soil
[Ref.: #9635]	Country	Japan
[Ref.: #9635]	Country ISO 3 Code	JPN
[Ref.: #9635]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Omiya, Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF178697 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	336
Soil Samples	6254
Animal Samples	471
Plant Samples	2191
Total Samples	9252

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9635]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces omiyaensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4806	D44376	120	GenBank ENA	68247 tax ID	*
[Ref.: #20218]	Streptomyces omiyaensis gene for 16S rRNA, partial sequence, strain: NBRC 13449	AB184411	1467	GenBank ENA	68247 tax ID	*
[Ref.: #20218]	Streptomyces omiyaensis strain NRRL B-1587 16S ribosomal RNA gene, partial sequence	EF178697	1482	GenBank ENA	68247 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces omiyaensis JCM 4806	GCA_014650895	scaffold	GenBank ENA	68247 tax ID	*
[Ref.: #66792]	Streptomyces omiyaensis strain JCM 4806	68247.3	wgs	PATRIC	68247 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces omiyaensis JCM 4806 NCBI: GCA_014650895.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces omiyaensis JCM 4806 NCBI: GCA_014650895.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.894	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.301	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.277	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.832	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #9635]

Culture collection no.

DSM 40552, ATCC 27454, CBS 750.72, IFO 13449, ISP 5552, JCM 4806, NBRC 13449, NRRL B-1587, RIA 1410, NIHJ 102, BCRC 11897, CGMCC 4.1987, IMET 43362, VKM Ac-1903

[Ref.: #84539]

SI-ID 297033

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and characterization of cyclo-(tryptophanyl-prolyl) and chloramphenicol from Streptomyces sp. SUK 25 with antimethicillin-resistant Staphylococcus aureus activity.	Alshaibani MM, Jalil J, Sidik NM, Edrada-Ebel R, Zin NM	Drug Des Devel Ther	10.2147/DDDT.S101212	2016	*

References

#9635

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40552

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84539

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297033.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces omiyaensis JCM 4806

Streptomyces omiyaensis JCM 4806

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