Name: Streptomyces novaecaesareae DSM 40358
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15431

Type strain:

Species: Streptomyces novaecaesareae

Culture col. no.: DSM 40358, ATCC 27452, CBS 134.20, CBS 669.72, IFO 13368, ISP 5358, NBRC 13368, NRRL B-1267, RIA 1329, JCM 4800, BCRC 15151, NRRL B-3011, VKM Ac-963

Strain history: KCC S-0800 <-- IFO 13368 <-- SAJ <-- ISP 5358 <-- CBS 134.20 <-- IMRU 3831.

NCBI tax ID(s): 68244 (species)

SI-ID 389480

ATCC 27452, IFO 13368, NRRL B-1267, DSM 40358, JCM 4800, NRRL B-3011, VKM Ac-963, CBS 134.20, NBRC 13368, BCRC 15151, CCRC 15151

Special Collections

Other strains from Streptomyces novaecaesareae

Section

Streptomyces novaecaesareae DSM 40358 is a spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces novaecaesareae**
	Full Scientific Name (LPSN)	Streptomyces novaecaesareae Waksman and Henrici 1948 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.984

[Ref.: #69480]	Motility	no Confidence in %90.1

[Ref.: #19443]	Colony color	Brown
[Ref.: #19443]	Incubation period	10-14 days
[Ref.: #19443]	Cultivation medium used	ISP 2

[Ref.: #19443]	Colony color	Brown
[Ref.: #19443]	Incubation period	10-14 days
[Ref.: #19443]	Cultivation medium used	ISP 3

[Ref.: #19443]	Colony color	Red brown
[Ref.: #19443]	Incubation period	10-14 days
[Ref.: #19443]	Cultivation medium used	ISP 4

[Ref.: #19443]	Colony color	Yellow
[Ref.: #19443]	Incubation period	10-14 days
[Ref.: #19443]	Cultivation medium used	ISP 5

[Ref.: #19443]	Colony color	Brown
[Ref.: #19443]	Incubation period	10-14 days
[Ref.: #19443]	Cultivation medium used	ISP 6

[Ref.: #19443]	Colony color	Brown
[Ref.: #19443]	Incubation period	10-14 days
[Ref.: #19443]	Cultivation medium used	ISP 7

[Ref.: #19443]	Multicellular complex forming ability	no
[Ref.: #19443]	Medium Name (multicellularity)	ISP 2

[Ref.: #19443]	Multicellular complex forming ability	no
[Ref.: #19443]	Medium Name (multicellularity)	ISP 3

[Ref.: #19443]	Multicellular complex forming ability	no
[Ref.: #19443]	Medium Name (multicellularity)	ISP 4

[Ref.: #19443]	Multicellular complex forming ability	no
[Ref.: #19443]	Medium Name (multicellularity)	ISP 5

[Ref.: #19443]	Multicellular complex forming ability	no
[Ref.: #19443]	Medium Name (multicellularity)	ISP 6

[Ref.: #19443]	Multicellular complex forming ability	no
[Ref.: #19443]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9281]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9281]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9281]

Culture medium composition

expand / minimize

[Ref.: #19443]

Culture medium

ISP 2

[Ref.: #19443]

Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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[Ref.: #19443]

Culture medium

ISP 6

[Ref.: #19443]

Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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		Temperature
[Ref.: #9281]	growth	28 °C
[Ref.: #19443]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %92.255

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19443]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19443]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19443]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19443]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19443]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19443]	mannitol ChEBI	+
[Ref.: #19443]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19443]	raffinose ChEBI	+
[Ref.: #19443]	rhamnose ChEBI	+
[Ref.: #19443]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19443]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19443]	305	+	-	-	-	-	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9281]	Sample type/isolated from	soil
[Ref.: #9281]	Country	USA
[Ref.: #9281]	Country ISO 3 Code	USA
[Ref.: #9281]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9281]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19443]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces novaecaesareae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4800	D44371	120	GenBank ENA	68244 tax ID	*
[Ref.: #20218]	Streptomyces novaecaesareae gene for 16S rRNA, partial sequence, strain: NBRC 13368	AB184357	1478	GenBank ENA	68244 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces novaecaesareae NRRL B-1267	GCA_000716875	contig	GenBank ENA	68244 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces novaecaesareae NRRL B-1267 NCBI: GCA_000716875.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.984	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.841	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.255	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.221	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.1	no

Availability in culture collections External links

[Ref.: #9281]

Culture collection no.

DSM 40358, ATCC 27452, CBS 134.20, CBS 669.72, IFO 13368, ISP 5358, NBRC 13368, NRRL B-1267, RIA 1329, JCM 4800, BCRC 15151, NRRL B-3011, VKM Ac-963

[Ref.: #84518]

SI-ID 389480

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces sp. AT37 isolated from a Saharan soil produces a furanone derivative active against multidrug-resistant Staphylococcus aureus.	Driche EH, Sabaou N, Bijani C, Zitouni A, Pont F, Mathieu F, Badji B	World J Microbiol Biotechnol	10.1007/s11274-017-2265-y	2017	*
Phylogeny	Streptomyces seymenliensis sp. nov., isolated from soil.	Tatar D, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-014-0339-5	2014	*

References

#9281

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40358

#19443

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84518

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389480.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces novaecaesareae NRRL B-1267

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