Name: Streptomyces lanatus SV 1944
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15341

Type strain:

Species: Streptomyces lanatus

Strain Designation: SV 1944

Culture col. no.: DSM 40090, AS 4.1371, ATCC 19775, CBS 513.68, IFO 12787, ISP 5090, NBRC 12787, NRRL B-2291, RIA 1055, JCM 4332, BCRC 12060, CGMCC 4.1371, JCM 4588

Strain history: KCC S-0332 <-- H. Nonomura <-- ISP 5090 <-- NRRL B-2291 <-- W. Frommer SV 1944.

NCBI tax ID(s): 66900 (species)

SI-ID 14122

LMG 19380, ATCC 19775, CCRC 12060, DSM 40090, IFO 12787, JCM 4332, JCM 4588, NRRL B-2291, CBS 513.68, NBRC 12787, AS 4.1371, BCRC 12060, CGMCC 4.1371

Section

Streptomyces lanatus SV 1944 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lanatus**
	Full Scientific Name (LPSN)	Streptomyces lanatus Frommer 1959 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.091

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9302]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9302]

Culture medium growth

[Ref.: #9302]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9302]

Culture medium composition

expand / minimize

[Ref.: #9302]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9302]

Culture medium growth

[Ref.: #9302]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9302]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9302]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9302]

Name of produced compound

actinomycin X

	Metabolite production	Metabolite	Production
[Ref.: #67770]		actinomycin X	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9302]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9302]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces lanatus partial 16S rRNA gene, strain ISP 5090	AJ399469	1449	ENA	66900 tax ID	*
[Ref.: #20218]	Streptomyces lanatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4332	D44055	121	ENA	66900 tax ID	*
[Ref.: #20218]	Streptomyces lanatus gene for 16S rRNA, partial sequence, strain: NBRC 12787	AB184845	1475	ENA	66900 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces lanatus JCM 4588	GCA_014655715	scaffold	GenBank	66900 tax ID	*
[Ref.: #66792]	Streptomyces lanatus strain JCM 4588	66900.3	wgs	PATRIC	66900 tax ID	*

[Ref.: #67770]

GC-content

72.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces lanatus JCM 4588 NCBI: GCA_014655715.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lanatus JCM 4588 NCBI: GCA_014655715.1
[Ref.: #69480]	motile	no	93.86	no
[Ref.: #69480]	flagellated	no	97.585	no
[Ref.: #69480]	gram-positive	yes	89.309	no
[Ref.: #69480]	anaerobic	no	99.342	no
[Ref.: #69480]	aerobic	yes	94.298	no
[Ref.: #69480]	halophile	no	92.95	no
[Ref.: #69480]	spore-forming	yes	94.688	no
[Ref.: #69480]	glucose-util	yes	90.555	no
[Ref.: #69480]	thermophile	no	99.057	no
[Ref.: #69480]	glucose-ferment	no	89.707	no

Availability in culture collections External links

[Ref.: #9302]

Culture collection no.

DSM 40090, AS 4.1371, ATCC 19775, CBS 513.68, IFO 12787, ISP 5090, NBRC 12787, NRRL B-2291, RIA 1055, JCM 4332, BCRC 12060, CGMCC 4.1371, JCM 4588

[Ref.: #84434]

SI-ID 14122

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim.	Wang Z, Jiang B, Li X, Gan L, Long X, Zhang Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002877	2018	*
Phylogeny	Streptomyces flavalbus sp. nov., an actinobacterium isolated from rhizosphere of maize (Zea mays L.).	Cao T, Shen Y, Zhao J, Liu C, Zhao X, Jin L, Li Y, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-017-1004-6	2018	*
Phylogeny	Streptomyces cerasinus sp. nov., isolated from soil in Thailand.	Kanchanasin P, Moonmangmee D, Phongsopitanun W, Tanasupawat S, Moonmangmee S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002212	2017	*
Phylogeny	Langkocyclines: novel angucycline antibiotics from Streptomyces sp. Acta 3034(*).	Kalyon B, Tan GY, Pinto JM, Foo CY, Wiese J, Imhoff JF, Sussmuth RD, Sabaratnam V, Fiedler HP	J Antibiot (Tokyo)	10.1038/ja.2013.53	2013	*
Phylogeny	Streptomyces shenzhenensis sp. nov., a novel actinomycete isolated from mangrove sediment.	Hu H, Lin HP, Xie Q, Li L, Xie XQ, Sun M, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-011-9618-6	2011	*

References

#9302

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40090

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84434

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14122.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces lanatus JCM 4588

Streptomyces lanatus JCM 4588

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