Strain identifier
BacDive ID: 15341
Type strain: 
Species: Streptomyces lanatus
Strain Designation: SV 1944
Strain history: KCC S-0332 <-- H. Nonomura <-- ISP 5090 <-- NRRL B-2291 <-- W. Frommer SV 1944.
NCBI tax ID(s): 66900 (species)
version 8.1 (current version)
General
@ref: 9302
BacDive-ID: 15341
DSM-Number: 40090
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production
description: Streptomyces lanatus SV 1944 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 66900
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9302 | <- E.B. Shirling, ISP <- NRRL <- W. Frommer, SV 1944 |
| 67770 | KCC S-0332 <-- H. Nonomura <-- ISP 5090 <-- NRRL B-2291 <-- W. Frommer SV 1944. |
doi: 10.13145/bacdive15341.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces lanatus
- full scientific name: Streptomyces lanatus Frommer 1959 (Approved Lists 1980)
@ref: 9302
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces lanatus
full scientific name: Streptomyces lanatus Frommer 1959
strain designation: SV 1944
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.091 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9302 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9302 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9302 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
compound production
- @ref: 9302
- compound: actinomycin X
metabolite production
- @ref: 67770
- metabolite: actinomycin X
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 9302
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9302
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces lanatus partial 16S rRNA gene, strain ISP 5090 | AJ399469 | 1449 | ena | 66900 |
| 20218 | Streptomyces lanatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4332 | D44055 | 121 | ena | 66900 |
| 20218 | Streptomyces lanatus gene for 16S rRNA, partial sequence, strain: NBRC 12787 | AB184845 | 1475 | ena | 66900 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces lanatus JCM 4588 | GCA_014655715 | scaffold | ncbi | 66900 |
| 66792 | Streptomyces lanatus strain JCM 4588 | 66900.3 | wgs | patric | 66900 |
GC content
- @ref: 67770
- GC-content: 72.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 93.86 | no |
| flagellated | no | 97.585 | no |
| gram-positive | yes | 89.309 | no |
| anaerobic | no | 99.342 | no |
| aerobic | yes | 94.298 | no |
| halophile | no | 92.95 | no |
| spore-forming | yes | 94.688 | no |
| glucose-util | yes | 90.555 | no |
| thermophile | no | 99.057 | no |
| glucose-ferment | no | 89.707 | no |
External links
@ref: 9302
culture collection no.: DSM 40090, AS 4.1371, ATCC 19775, CBS 513.68, IFO 12787, ISP 5090, NBRC 12787, NRRL B-2291, RIA 1055, JCM 4332, BCRC 12060, CGMCC 4.1371, JCM 4588
straininfo link
- @ref: 84434
- straininfo: 14122
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21732032 | Streptomyces shenzhenensis sp. nov., a novel actinomycete isolated from mangrove sediment. | Hu H, Lin HP, Xie Q, Li L, Xie XQ, Sun M, Hong K | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9618-6 | 2011 | China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/*classification/genetics/*isolation & purification | Genetics |
| Phylogeny | 23820614 | Langkocyclines: novel angucycline antibiotics from Streptomyces sp. Acta 3034(*). | Kalyon B, Tan GY, Pinto JM, Foo CY, Wiese J, Imhoff JF, Sussmuth RD, Sabaratnam V, Fiedler HP | J Antibiot (Tokyo) | 10.1038/ja.2013.53 | 2013 | Animals, *Anthraquinones/chemistry/metabolism/pharmacology, *Anti-Bacterial Agents/chemistry/metabolism/pharmacology, Antineoplastic Agents/*pharmacology, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis, Gram-Positive Bacteria/*drug effects, Hep G2 Cells, Humans, Malaysia, Mice, Models, Molecular, Molecular Sequence Data, NIH 3T3 Cells, *Oligosaccharides/chemistry/metabolism/pharmacology, Phylogeny, *Polycyclic Aromatic Hydrocarbons/chemistry/metabolism/pharmacology, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification/*metabolism, Structure-Activity Relationship | Metabolism |
| Phylogeny | 28884662 | Streptomyces cerasinus sp. nov., isolated from soil in Thailand. | Kanchanasin P, Moonmangmee D, Phongsopitanun W, Tanasupawat S, Moonmangmee S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002212 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 29327333 | Streptomyces flavalbus sp. nov., an actinobacterium isolated from rhizosphere of maize (Zea mays L.). | Cao T, Shen Y, Zhao J, Liu C, Zhao X, Jin L, Li Y, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-017-1004-6 | 2018 | DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, *Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/metabolism, Zea mays/*growth & development | Metabolism |
| Phylogeny | 29944112 | Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim. | Wang Z, Jiang B, Li X, Gan L, Long X, Zhang Y, Tian Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002877 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Stems/*microbiology, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/growth & development/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9302 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40090) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40090 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84434 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14122.1 | StrainInfo: A central database for resolving microbial strain identifiers |