Streptomyces lateritius (DSM 40163, ATCC 19776, ATCC 19913)

Name: Streptomyces lateritius (DSM 40163, ATCC 19776, ATCC 19913)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15342

Type strain

Strain Designation 6993

Culture col. no. DSM 40163 ATCC 19776 ATCC 19913 CBS 514.68 IFO 12788 14 more

NCBI tax ID(s) 67313

Special Collections DSMZ JCM KCTC Wink compendium

History <- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA KCC S-0389 <-- T. P. Preobrazhenskaya INA 6993.

Links

Streptomyces lateritius 6993 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13368

LMG 19372,ATCC 19776,ATCC 19913,CCRC 13774,DSM 40163,IFO 12788,JCM 4389,NRRL B-5349,NRRL B-5423,VKM Ac-1849,VKM Ac-577,CBS 514.68,CBS 262.66,AS 4.1427,NBRC 12788,BCRC 13774,KCTC 19962,CGMCC 4.1427

@ref 20215

Last LPSN update 2026-02-09 11:21:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces lateritius

Full scientific name Streptomyces lateritius (Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonyms (1)

"Actinomyces lateritius"

BacDive ID	Other strains from **Streptomyces lateritius** (3)	Type strain
16083	S. lateritius Tü 22, DSM 40701, ETH 11382
127797	S. lateritius ST005090(HKI), 95, 4, China,
127798	S. lateritius ST005089(HKI), IMET 40267

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.7
125439		90.1
125438	positive	91.696

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9359	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9359	positive	growth	28
18550	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97

Spore formation

@ref	Spore formation	Confidence
125438		93.317

Compound production

9359

Compoundgranaticin complex

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18550	NaCl	positive	maximum	2.5 %

Observation

67770

Observationquinones: MK-9(H₈), MK-9(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18550	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
18550	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
18550	28757 ChEBI	fructose	-
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18550	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18550	29864 ChEBI	mannitol	-
18550	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18550	16634 ChEBI	raffinose	-
18550	26546 ChEBI	rhamnose	-
18550	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
18550	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18550	-	-	-	-	-	-	-	+	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

9359

Sample typesoil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18550	1	German classification According to TRBA 466
9359	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464971v1 assembly for Streptomyces lateritius JCM 4389	scaffold	GCA_014649715	67313.3	8109482349	67313	47.61

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces lateritius strain IFO 12788 16S ribosomal RNA gene, partial sequence	AY999855	1420	67313
20218	Streptomyces lateritius 16S ribosomal RNA gene, partial sequence	AF454764	1426	67313
20218	Streptomyces lateritius gene for 16S ribosomal RNA, partial sequence, strain: JCM 4389	D44104	120	67313
20218	Streptomyces lateritius 16S rRNA gene, type strain LMG 19372	AJ781326	1478	67313
20218	Streptomyces lateritius gene for 16S rRNA, partial sequence, strain: NBRC 12788	AB184145	1480	67313
124043	Streptomyces lateritius strain JCM 4389 16S ribosomal RNA gene, partial sequence.	MT760534	1330	67313

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces lateritius JCM 4389
NCBI: GCA_014649715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.60	no
125439	motility	BacteriaNetⓘ	no	90.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces lateritius JCM 4389
NCBI: GCA_014649715.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.70	no
125438	anaerobic	anaerobicⓘ	no	96.37	no
125438	aerobic	aerobicⓘ	yes	86.04	no
125438	spore-forming	spore-formingⓘ	yes	93.32	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Investigation of a Natural Antibiotic's Properties Effective against Resistant Opportunistic Pathogenic Infections.	Khassenova A, Shorabayev Y, Zhantlessova S, Baimakhanova B, Sultanova A, Yelubaeva M.	J Microbiol Biotechnol	10.4014/jmb.2409.09018	2025
Genetics	Environmental impact on the genome shaping of putative new Streptomyces species.	Lorkova Z, Cimermanova M, Piknova M, Adhvaryu S, Pristas P, Kiskova J.	BMC Microbiol	10.1186/s12866-025-03779-x	2025
	Biocontrol potential of Streptomyces lateritius ZY37 against Phytophthora root rot in soybean and optimization of fermentation conditions.	Liu H, Hao C, Zhang Z, Xu Y, Jiao X, Zhang H, Wen J.	J Appl Microbiol	10.1093/jambio/lxaf175	2025
Genetics	A new isolate of Streptomyces lateritius (Z1-26) with antibacterial activity against fish pathogens and immune enhancement effects on crucian carp (Carassius auratus).	Yang Y, Jin D, Long W, Lai X, Sun Y, Zhai F, Wang P, Zhou X, Hu Y, Xia L, Yi G.	J Fish Dis	10.1111/jfd.13723	2023
	Marine-Derived Natural Substances with Anticholinesterase Activity.	Dimitrova D, Kehayova G, Dimitrova S, Dragomanova S.	Mar Drugs	10.3390/md23110439	2025
	New Lactones Produced by Streptomyces sp. SN5431 and Their Antifungal Activity against Bipolaris maydis.	Wang Y, Yang D, Yu Z.	Microorganisms	10.3390/microorganisms11030616	2023
Metabolism	Introduction of marine-derived Streptomyces sp. UTMC 1334 as a source of pyrrole derivatives with anti-acetylcholinesterase activity.	Almasi F, Mohammadipanah F, Adhami HR, Hamedi J.	J Appl Microbiol	10.1111/jam.14043	2018
	Acidophilic and Acid Tolerant Actinobacteria as New Sources of Antimicrobial Agents against Helicobacter Pylori.	Eftekharivash L, Hamedi J, Zarrini G, Bakhtiari R.	Arch Razi Inst	10.22092/ari.2019.128039.1401	2021
	[Microecological mechanisms of red-leaf disease occurrence in Salvia miltiorrhiza Bge].	Duan JL, Shu ZM, Wei LZ, Fu LL, Xue QH.	Ying Yong Sheng Tai Xue Bao		2013
	Airborne bacteria in show caves from Southern Spain.	Dominguez-Monino I, Jurado V, Rogerio-Candelera MA, Hermosin B, Saiz-Jimenez C.	Microb Cell	10.15698/mic2021.10.762	2021
	Zinc-Solubilizing Streptomyces spp. as Bioinoculants for Promoting the Growth of Soybean (Glycine max (L.) Merrill).	Suriyachadkun C, Chunhachart O, Srithaworn M, Tangchitcharoenkhul R, Tangjitjareonkun J.	J Microbiol Biotechnol	10.4014/jmb.2206.06058	2022
	Assessment of Pharmacological Potential of Novel Exopolysaccharide Isolated from Marine Kocuria sp. Strain AG5: Broad-Spectrum Biological Investigations.	Alshawwa SZ, Alshallash KS, Ghareeb A, Elazzazy AM, Sharaf M, Alharthi A, Abdelgawad FE, El-Hossary D, Jaremko M, Emwas AH, Helmy YA.	Life (Basel)	10.3390/life12091387	2022
	Cross-Bioaugmentation Among Four Remote Soil Samples Contaminated With Oil Exerted Just Inconsistent Effects on Oil-Bioremediation.	Al-Mailem DM, Kansour MK, Radwan SS.	Front Microbiol	10.3389/fmicb.2019.02827	2019
	Bioaugmentation failed to enhance oil bioremediation in three soil samples from three different continents.	Radwan SS, Al-Mailem DM, Kansour MK.	Sci Rep	10.1038/s41598-019-56099-2	2019
Pathogenicity	Caenorhabditis elegans susceptibility to Daldinia cf. concentrica bioactive volatiles is coupled with expression activation of the stress-response transcription factor daf-16, a part of distinct nematicidal action.	Sanadhya P, Bucki P, Liarzi O, Ezra D, Gamliel A, Braun Miyara S.	PLoS One	10.1371/journal.pone.0196870	2018
Metabolism	[Naphthoquinone antibiotics from Streptomyces lateritius. I Fermentation, isolation and characterization of granatomycins A, C, and D].	Fleck WF, Strauss DG, Prauser H.	Z Allg Mikrobiol	10.1002/jobm.3630200902	1980
Phylogeny	New quinone antibiotics of the granaticin type, isolated from Streptomyces lateritius. II. Structure determination.	Gilpin ML, Box SJ, Elson AL	J Antibiot (Tokyo)	10.7164/antibiotics.41.512	1988

References

#9359	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40163
#18550	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces lateritius (DSM 40163, ATCC 19776, ATCC 19913)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014649715

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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