Name: Streptomyces violaceoruber Ac6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15308

Type strain:

Species: Streptomyces violaceoruber

Strain Designation: Ac6

Culture col. no.: DSM 43030, ATCC 15719, IFO 12244, JCM 3037, KCC A-0037, NBRC 12244, ATCC 15812, CGMCC 4.1070, IFM 1139, IMET 43409, KCTC 9116, NBIMCC 1032, NCIMB 10164, NRRL B-3088, RIA 729, VKM Ac-644

Strain history: KCC A-0037 <-- H. A. Lechevalier <-- N. A. Krassilnikov Ac6.

NCBI tax ID(s): 68174 (species)

Other strains from Streptomyces violaceoruber

Section

Streptomyces violaceoruber Ac6 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces violaceoruber**
	Full Scientific Name (LPSN)	Streptomyces violaceoruber (Waksman and Curtis 1916) Pridham 1970 (Approved Lists 1980)

	Synonym	Actinopycnidium caeruleum
	Synonym	"Actinomyces* tricolor"*
	Synonym	"Actinomyces* anthocyanicus"*
	Synonym	"Actinomyces* violaceolatus"*
	Synonym	Streptomyces humiferus
	Synonym	Streptomyces anthocyanicus
	Synonym	Streptomyces tricolor
	Synonym	Streptomyces violaceolatus
	Synonym	Streptomyces roseodiastaticus
	Synonym	"Actinomyces* violaceusruber"*
	Synonym	"Actinomyces* coelescens"*
	Synonym	"Actinomyces* roseodiastaticus"*
	Synonym	Streptomyces coelescens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10700]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #10700]

Culture medium growth

[Ref.: #10700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10700]

Culture medium composition

expand / minimize

[Ref.: #10700]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10700]

Culture medium growth

[Ref.: #10700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10700]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10700]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #10700]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10700]	Sample type/isolated from	soil
[Ref.: #10700]	Geographic location (country and/or sea, region)	near Moscow
[Ref.: #10700]	Country	Russia
[Ref.: #10700]	Country ISO 3 Code	RUS
[Ref.: #10700]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF503491 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	991
Soil Samples	2201
Animal Samples	1970
Plant Samples	240
Total Samples	5402

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10700]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces humiferus 16S ribosomal RNA, partial sequence	AF503491	1509	ENA	66372 tax ID	*
[Ref.: #20218]	Streptomyces humiferus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3037	D43972	121	ENA	66372 tax ID	*
[Ref.: #20218]	Streptomyces humiferus strain KCTC 9116 16S ribosomal RNA gene, partial sequence	AY999818	1420	ENA	66372 tax ID	*
[Ref.: #20218]	Streptomyces humiferus gene for 16S rRNA, partial sequence, strain: NBRC 12244	AB184070	1457	ENA	66372 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces anthocyanicus JCM 3037	GCA_014647695	scaffold	GenBank	68174 tax ID
[Ref.: #66792]	Streptomyces humiferus strain JCM 3037	66372.3	wgs	PATRIC	68174 tax ID	*

[Ref.: #67770]	GC-content	72.5 mol%
[Ref.: #67770]	GC-content	71.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces humiferus strain JCM 3037 PATRIC: 66372.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces humiferus strain JCM 3037 PATRIC: 66372.3
[Ref.: #69480]	gram-positive	yes	89.338	no
[Ref.: #69480]	anaerobic	no	99.216	no
[Ref.: #69480]	halophile	no	92.713	no
[Ref.: #69480]	spore-forming	yes	93.81	no
[Ref.: #69480]	glucose-util	yes	90.91	no
[Ref.: #69480]	thermophile	no	99.106	yes
[Ref.: #69480]	flagellated	no	97.788	no
[Ref.: #69480]	motile	no	93.379	no
[Ref.: #69480]	aerobic	yes	93.501	no
[Ref.: #69480]	glucose-ferment	no	89.818	no

Availability in culture collections External links

[Ref.: #10700]

Culture collection no.

DSM 43030, ATCC 15719, IFO 12244, JCM 3037, KCC A-0037, NBRC 12244, ATCC 15812, CGMCC 4.1070, IFM 1139, IMET 43409, KCTC 9116, NBIMCC 1032, NCIMB 10164, NRRL B-3088, RIA 729, VKM Ac-644

References

#10700

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43030

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces humiferus strain JCM 3037

Streptomyces humiferus strain JCM 3037

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