Streptomyces violaceoruber (DSM 43030, ATCC 15719, IFO 12244)

Name: Streptomyces violaceoruber (DSM 43030, ATCC 15719, IFO 12244)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15308

Type strain

Strain Designation Ac6

Culture col. no. DSM 43030 ATCC 15719 IFO 12244 JCM 3037 KCC A-0037 15 more

NCBI tax ID(s) 1935

Special Collections DSMZ JCM KCTC JMRC

History DSMZ <- KCC <- H. Lechevalier <- N.A. Krassilnikov, INMI, Ac6 JCM <-- KCC A-0037 <-- H. A. Lechevalier <-- N. A. Krassilnikov Ac6.

Links

Streptomyces violaceoruber Ac6 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36948

ATCC 15812,ATCC 15719,DSM 43030,IFO 12244,JCM 3037,IMET 43409,NCIMB 10164,VKM Ac-644,AS 4.1070,KCTC 9116,NBRC 12244,NBIMCC 1032,CGMCC 4.1070

@ref 20215

Last LPSN update 2026-05-29 08:28:30

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces violaceoruber

Full scientific name Streptomyces violaceoruber (Waksman and Curtis 1916) Pridham 1970 (Approved Lists 1980)

Synonyms (13)

"Actinomyces coelescens"
"Actinomyces violaceolatus"
"Actinomyces anthocyanicus"
Streptomyces humiferus
Streptomyces coelescens
Streptomyces anthocyanicus
Streptomyces tricolor
Streptomyces violaceolatus
Actinopycnidium caeruleum
"Actinomyces tricolor"
"Actinomyces violaceusruber"
"Actinomyces roseodiastaticus"
Streptomyces roseodiastaticus

BacDive ID	Other strains from **Streptomyces violaceoruber** (17)	Type strain
16080	S. violaceoruber DSM 40049, ATCC 14980, ATCC 19816, ATCC 3355, ... (type strain)
16081	S. violaceoruber A3(2), DSM 40783, JCM 4979, KCC S-0979, LBG ...
16082	S. violaceoruber B 241, DSM 40687
16084	S. violaceoruber DSM 41006, IMRU 3033
16085	S. violaceoruber DSM 41242, IMRU 3941, NRRL B-1257
16086	S. violaceoruber DSM 41244, IMRU 3943, NRRL B-1689
16087	S. violaceoruber DSM 41245, IMRU 3944, NRRL B-2787
16088	S. violaceoruber DSM 41246, IMRU 3945, NRRL B-3034
16089	S. violaceoruber 33C, ID 3844, DSM 41733
16090	S. violaceoruber Actino 7, DSM 41822
126467	S. violaceoruber ST033551(HKI), GT20051132, HKI 0475
126516	S. violaceoruber ST026834(HKI), Lorenz Actino7, GT20024038,
126517	S. violaceoruber ST004038,
126518	S. violaceoruber ST002898,
164994	S. violaceoruber JCM 4691, IFO 15731, NBRC 15731
176653	S. violaceoruber DSM 41013, IMRU 3047
176654	S. violaceoruber DSM 41017, IMRU 3071

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		92.916
125439		98.512	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10700	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10700	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10700	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.566

Spore formation

@ref	Spore formation	Confidence
125438		91.837

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10700	soil	near Moscow	Russia	RUS	Europe
67770	Soil

Taxonmaps

69479

Global distribution of 16S sequence AF503491 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	991
Soil Samples	2201
Animal Samples	1970
Plant Samples	240
Total Samples	5402

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10700	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1464769v1 assembly for Streptomyces anthocyanicus JCM 3037	scaffold	GCA_014647695	66372.3	8109737409	68174	37.26

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces humiferus 16S ribosomal RNA, partial sequence	AF503491	1509	66372
20218	Streptomyces anthocyanicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3037	D43972	121	66372
20218	Streptomyces humiferus strain KCTC 9116 16S ribosomal RNA gene, partial sequence	AY999818	1420	66372
20218	Streptomyces anthocyanicus gene for 16S rRNA, partial sequence, strain: NBRC 12244	AB184070	1457	66372
124043	Streptomyces humiferus strain JCM 3037 16S ribosomal RNA gene, partial sequence.	MT760387	1320	68174
124043	Streptomyces humiferus strain NRRL B-3088 16S ribosomal RNA gene, partial sequence.	AY999724	1409	68174

GC content

@ref	GC-content (mol%)	Method
67770	72.5
67770	71.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1464769v1 assembly for Streptomyces anthocyanicus JCM 3037
BV-BRC: 66372.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	98.51	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.57	no
125439	motility	BacteriaNetⓘ	no	92.92	no
125439	spore_formation	BacteriaNetⓘ	yes	85.25	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces humiferus strain JCM 3037
PATRIC: 66372.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.79	no
125438	anaerobic	anaerobicⓘ	no	97.38	no
125438	spore-forming	spore-formingⓘ	yes	91.84	no
125438	aerobic	aerobicⓘ	yes	89.00	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

References

#10700	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43030
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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