Streptomyces hydrogenans FHP 678 | Type strain | DSM 40586, ATCC 19631, CBS 776.72, IFO 13475, ISP 5586, NBRC 13475, RIA 1436, JCM 4771, BCRC 11855, HAMBI 405, NRRL B-12091, VKM Ac-1919

Caption:

Medium 65 28°C

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Information on culture and growth conditions Culture and growth conditions

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

Culture medium

ISP 2

Culture medium growth

Culture medium composition

Culture medium

ISP 3

Culture medium growth

Culture medium composition

Culture medium

ISP 4

Culture medium growth

Culture medium composition

Culture medium

ISP 5

Culture medium growth

Culture medium composition

What are isolation sources categories?

		Temperature
[Ref.: #9663]	growth	28 °C
[Ref.: #19479]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %98.7

[Ref.: #19479]	Spore description	Formation of spore chains (rectiflixibilis), spore surface smooth, fragmentation in aerial mycelium
[Ref.: #19479]	Type of spore	spore
[Ref.: #19479]	Ability of spore formation	yes
[Ref.: #125438]	Ability of spore formation	yes Confidence in %91.996
[Ref.: #125439]	Ability of spore formation	yes Confidence in %93.7

[Ref.: #9663]	Name of produced compound	20-ß keto-reductase
[Ref.: #9663]	Name of produced compound	20-ß hydroxysteroid dehydrogenase
[Ref.: #9663]	Name of produced compound	ketoses
[Ref.: #9663]	Name of produced compound	steroids
[Ref.: #20216]	Name of produced compound	20-ß-keto reductase
[Ref.: #20216]	Name of produced compound	20-ß-steroid dehydrogenase

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19479]		NaCl		maximum	5	%

[Ref.: #19479]	Name of tolerated compound	Lysozyme
[Ref.: #19479]	Tolerance percentage	0.1

	Metabolite	Utilization activity
[Ref.: #19479]	arabinose ChEBI	+
[Ref.: #19479]	cellulose ChEBI	-
[Ref.: #19479]	fructose ChEBI	-
[Ref.: #19479]	glucose ChEBI	+
[Ref.: #19479]	mannitol ChEBI	-
[Ref.: #19479]	myo-inositol ChEBI	-
[Ref.: #19479]	raffinose ChEBI	-
[Ref.: #19479]	rhamnose ChEBI	-
[Ref.: #19479]	sucrose ChEBI	-
[Ref.: #19479]	xylose ChEBI	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9663]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9663]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19479]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces exfoliatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4771	AB979446	1465	GenBank ENA	1905 tax ID
[Ref.: #20218]	Streptomyces exfoliatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4771	D44348	120	GenBank ENA	1905 tax ID	*
[Ref.: #20218]	Streptomyces hydrogenans gene for 16S rRNA, partial sequence, strain: NBRC 13475	AB184868	1452	GenBank ENA	1905 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTRHn16 gene for 16S ribosomal RNA, partial sequence	AB920597	1280	GenBank ENA	1571733 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTS4 gene for 16S ribosomal RNA, partial sequence	AB920600	1271	GenBank ENA	1571736 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTS3 gene for 16S ribosomal RNA, partial sequence	AB920605	1302	GenBank ENA	1571741 tax ID	*
[Ref.: #20218]	Streptomyces exfoliatus gene for 16S ribosomal RNA, partial sequence, isolate: R1-1A/A106	AB922838	1173	GenBank ENA	1905 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces hydrogenans JCM 4771	GCA_014656075	scaffold	GenBank ENA	1873719 tax ID	*
[Ref.: #66792]	Streptomyces hydrogenans NBRC 13475	GCA_020521255	contig	GenBank ENA	1873719 tax ID	*
[Ref.: #66792]	Streptomyces hydrogenans strain JCM 4771	1873719.3	wgs	PATRIC	1873719 tax ID	*
[Ref.: #66792]	Streptomyces hydrogenans strain NBRC 13475	1873719.6	wgs	PATRIC	1873719 tax ID	*
[Ref.: #66792]	Streptomyces hydrogenans strain NBRC 13475	1873719.4	wgs	PATRIC	1873719 tax ID	*
[Ref.: #66792]	Streptomyces hydrogenans strain NBRC 13475	1873719.5	wgs	PATRIC	1873719 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces hydrogenans JCM 4771 NCBI: GCA_014656075.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	90.919	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.807	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	83.872	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	91.996	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.5	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89.6	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces hydrogenans JCM 4771 NCBI: GCA_014656075
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	93.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	90.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.7

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