Strain identifier

BacDive ID: 15308

Type strain: Yes

Species: Streptomyces violaceoruber

Strain Designation: Ac6

Strain history: KCC A-0037 <-- H. A. Lechevalier <-- N. A. Krassilnikov Ac6.

NCBI tax ID(s): 68174 (species)

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General

@ref: 10700

BacDive-ID: 15308

DSM-Number: 43030

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces violaceoruber Ac6 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 68174
  • Matching level: species

strain history

@refhistory
10700<- KCC <- H. Lechevalier <- N.A. Krassilnikov, INMI, Ac6
67770KCC A-0037 <-- H. A. Lechevalier <-- N. A. Krassilnikov Ac6.

doi: 10.13145/bacdive15308.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces violaceoruber
  • full scientific name: Streptomyces violaceoruber (Waksman and Curtis 1916) Pridham 1970 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinopycnidium caeruleum
    20215Actinomyces tricolor
    20215Actinomyces anthocyanicus
    20215Actinomyces violaceolatus
    20215Streptomyces humiferus
    20215Streptomyces anthocyanicus
    20215Streptomyces tricolor
    20215Streptomyces violaceolatus
    20215Streptomyces roseodiastaticus
    20215Actinomyces violaceusruber
    20215Actinomyces coelescens
    20215Actinomyces roseodiastaticus
    20215Streptomyces coelescens

@ref: 10700

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces humiferus

full scientific name: Streptomyces humiferus Goodfellow et al. 1986

strain designation: Ac6

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10700ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10700GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10700positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10700soilnear MoscowRussiaRUSEurope
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_357.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_357&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AF503491
  • Sequence Identity:
  • Total samples: 5402
  • soil counts: 2201
  • aquatic counts: 991
  • animal counts: 1970
  • plant counts: 240

Safety information

risk assessment

  • @ref: 10700
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces humiferus 16S ribosomal RNA, partial sequenceAF5034911509ena66372
20218Streptomyces humiferus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3037D43972121ena66372
20218Streptomyces humiferus strain KCTC 9116 16S ribosomal RNA gene, partial sequenceAY9998181420ena66372
20218Streptomyces humiferus gene for 16S rRNA, partial sequence, strain: NBRC 12244AB1840701457ena66372

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces humiferus strain JCM 303766372.3wgspatric68174
67770Streptomyces anthocyanicus JCM 3037GCA_014647695scaffoldncbi68174

GC content

@refGC-contentmethod
6777072.5
6777071.7genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes89.338no
anaerobicno99.216no
halophileno92.713no
spore-formingyes93.81no
glucose-utilyes90.91no
thermophileno99.106yes
flagellatedno97.788no
motileno93.379no
aerobicyes93.501no
glucose-fermentno89.818no

External links

@ref: 10700

culture collection no.: DSM 43030, ATCC 15719, IFO 12244, JCM 3037, KCC A-0037, NBRC 12244, ATCC 15812, CGMCC 4.1070, IFM 1139, IMET 43409, KCTC 9116, NBIMCC 1032, NCIMB 10164, NRRL B-3088, RIA 729, VKM Ac-644

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10700Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43030)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43030
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1