Name: Streptomyces griseoflavus A 28 No. 1118
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15262

Type strain:

Species: Streptomyces griseoflavus

Strain Designation: A 28 No. 1118

Culture col. no.: DSM 40456, ATCC 25456, CBS 409.52, CBS 689.69, ETH 10249, IFO 12372, IFO 13044, IMET 43530, ISP 5456, JCM 4479, KCC S-0479, NBRC 12372, NBRC 13044, NRRL B-5312, RIA 1236, VKM Ac-993, BCRC 12232, CGMCC 4.1454, KCTC 19070, LMG 19344

Strain history: KCC S-0479 <-- IFO 13044 <-- SAJ <-- ISP 5456 <-- CBS 409.52 <-- R. Ciferri.

NCBI tax ID(s): 35619 (species)

SI-ID 92742

LMG 19344, ATCC 25456, CCRC 12232, DSM 40456, IFO 13044, IMET 43530, JCM 4479, NRRL B-5312, VKM Ac-993, IFO 12372, CBS409.52, CBS 689.69, AS 4.1454, NBRC 13044, BCRC 12232, NBRC 12372, KCTC 19070, CGMCC 4.1454

Other strains from Streptomyces griseoflavus

Section

Streptomyces griseoflavus A 28 No. 1118 is a spore-forming, mesophilic bacterium that was isolated from garden soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces griseoflavus**
	Full Scientific Name (LPSN)	Streptomyces griseoflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces griseoflavus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.686

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9556]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9556]

Culture medium composition

expand / minimize

[Ref.: #9556]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9556]	growth	28 °C
[Ref.: #18593]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9556]	Temperature range	mesophilic
[Ref.: #18593]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18593]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18593]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18593]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18593]	mannitol ChEBI	+
[Ref.: #18593]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18593]	raffinose ChEBI	+
[Ref.: #18593]	rhamnose ChEBI	+
[Ref.: #18593]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18593]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18593]	150	-	-	-	-	-	-	-	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9556]	Sample type/isolated from	garden soil

[Ref.: #67770]	Sample type/isolated from	Garden soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184274 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	30
Animal Samples	18
Plant Samples	2
Total Samples	50

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18593]	Biosafety level	1	German classification
[Ref.: #9556]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces griseoflavus strain JCM 4479 16S ribosomal RNA gene, partial sequence	AY999772	1413	ENA	35619 tax ID	*
[Ref.: #20218]	Streptomyces griseoflavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4479	D44174	121	ENA	35619 tax ID	*
[Ref.: #20218]	Streptomyces griseoflavus 16S rRNA gene, type strain LMG 19344	AJ781322	1478	ENA	35619 tax ID	*
[Ref.: #20218]	Streptomyces griseoflavus gene for 16S rRNA, partial sequence, strain: NBRC 12372	AB184086	1463	ENA	35619 tax ID	*
[Ref.: #20218]	Streptomyces griseoflavus gene for 16S rRNA, partial sequence, strain: NBRC 13044	AB184274	1463	ENA	35619 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces griseoflavus JCM 4479	GCA_014649995	scaffold	GenBank	35619 tax ID
[Ref.: #66792]	Streptomyces griseoflavus strain JCM 4479	35619.5	wgs	PATRIC	35619 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces griseoflavus JCM 4479 NCBI: GCA_014649995.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces griseoflavus strain JCM 4479 PATRIC: 35619.5
[Ref.: #69480]	gram-positive	yes	91.108	no
[Ref.: #69480]	anaerobic	no	98.809	no
[Ref.: #69480]	halophile	no	91.173	no
[Ref.: #69480]	spore-forming	yes	96.207	no
[Ref.: #69480]	glucose-util	yes	89.166	no
[Ref.: #69480]	motile	no	94.158	no
[Ref.: #69480]	flagellated	no	97.768	no
[Ref.: #69480]	aerobic	yes	92.663	no
[Ref.: #69480]	thermophile	no	97.667	yes
[Ref.: #69480]	glucose-ferment	no	90.359	no

Availability in culture collections External links

[Ref.: #9556]

Culture collection no.

DSM 40456, ATCC 25456, CBS 409.52, CBS 689.69, ETH 10249, IFO 12372, IFO 13044, IMET 43530, ISP 5456, JCM 4479, KCC S-0479, NBRC 12372, NBRC 13044, NRRL B-5312, RIA 1236, VKM Ac-993, BCRC 12232, CGMCC 4.1454, KCTC 19070, LMG 19344

[Ref.: #84357]

SI-ID 92742

References

#9556

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40456

#18593

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84357

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92742.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces griseoflavus JCM 4479

Streptomyces griseoflavus strain JCM 4479

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