Strain identifier

BacDive ID: 15262

Type strain: Yes

Species: Streptomyces griseoflavus

Strain Designation: A 28 No. 1118

Strain history: KCC S-0479 <-- IFO 13044 <-- SAJ <-- ISP 5456 <-- CBS 409.52 <-- R. Ciferri.

NCBI tax ID(s): 35619 (species)

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General

@ref: 9556

BacDive-ID: 15262

DSM-Number: 40456

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces griseoflavus A 28 No. 1118 is a spore-forming, mesophilic bacterium that was isolated from garden soil.

NCBI tax id

  • NCBI tax id: 35619
  • Matching level: species

strain history

@refhistory
9556<- E.B. Shirling, ISP <- G. A. de Vries, CBS <- Ciferri, A 28 No. 1118
67770KCC S-0479 <-- IFO 13044 <-- SAJ <-- ISP 5456 <-- CBS 409.52 <-- R. Ciferri.

doi: 10.13145/bacdive15262.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces griseoflavus
  • full scientific name: Streptomyces griseoflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces griseoflavus

@ref: 9556

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces griseoflavus

full scientific name: Streptomyces griseoflavus (Krainsky 1914) Waksman and Henrici 1948

strain designation: A 28 No. 1118

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.686
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9556GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9556ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18593positiveoptimum28mesophilic
9556positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1859317234glucose+
1859322599arabinose+
1859317992sucrose+
1859318222xylose+
1859317268myo-inositol+
1859329864mannitol+
1859328757fructose+
1859326546rhamnose+
1859316634raffinose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18593-------+--+

Isolation, sampling and environmental information

isolation

@refsample type
9556garden soil
67770Garden soil

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Garden

taxonmaps

  • @ref: 69479
  • File name: preview.99_408.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_408&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184274
  • Sequence Identity:
  • Total samples: 50
  • soil counts: 30
  • animal counts: 18
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185931German classification
95561Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces griseoflavus strain JCM 4479 16S ribosomal RNA gene, partial sequenceAY9997721413ena35619
20218Streptomyces griseoflavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4479D44174121ena35619
20218Streptomyces griseoflavus 16S rRNA gene, type strain LMG 19344AJ7813221478ena35619
20218Streptomyces griseoflavus gene for 16S rRNA, partial sequence, strain: NBRC 12372AB1840861463ena35619
20218Streptomyces griseoflavus gene for 16S rRNA, partial sequence, strain: NBRC 13044AB1842741463ena35619

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces griseoflavus strain JCM 447935619.5wgspatric35619
67770Streptomyces griseoflavus JCM 4479GCA_014649995scaffoldncbi35619

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes91.108no
anaerobicno98.809no
halophileno91.173no
spore-formingyes96.207no
glucose-utilyes89.166no
motileno94.158no
flagellatedno97.768no
aerobicyes92.663no
thermophileno97.667yes
glucose-fermentno90.359no

External links

@ref: 9556

culture collection no.: DSM 40456, ATCC 25456, CBS 409.52, CBS 689.69, ETH 10249, IFO 12372, IFO 13044, IMET 43530, ISP 5456, JCM 4479, KCC S-0479, NBRC 12372, NBRC 13044, NRRL B-5312, RIA 1236, VKM Ac-993, BCRC 12232, CGMCC 4.1454, KCTC 19070, LMG 19344

straininfo link

  • @ref: 84357
  • straininfo: 92742

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9556Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40456)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40456
18593Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40456.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84357Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92742.1StrainInfo: A central database for resolving microbial strain identifiers