Helicobacter canadensis (CCUG 47163, ATCC 700968)

Name: Helicobacter canadensis (CCUG 47163, ATCC 700968)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 152593

Type strain

Culture col. no. CCUG 47163 ATCC 700968

NCBI tax ID(s) 537970 123841

Special Collections CCUG

Links

Helicobacter canadensis CCUG 47163 is a microaerophile prokaryote that was isolated from Human feces,diarrheic patient.

microaerophile genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100683

NCTC 13241,ATCC 700968,CCUG 47163

@ref 20215

Last LPSN update 2025-12-16 10:06:37

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Helicobacteraceae

Genus Helicobacter

Species Helicobacter canadensis

Full scientific name Helicobacter canadensis Fox et al. 2002

Synonyms (1)

"Pseudohelicobacter canadensis"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.4

Colony morphology

57546

Incubation period2-3 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
57546	positive	growth	37-42

Physiology and metabolism

Oxygen tolerance

57546

Oxygen tolerancemicroaerophile

Spore formation

@ref	Spore formation	Confidence
125439		98.9

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	kanosamine biosynthesis II	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	CMP-KDO biosynthesis	100	4 of 4
66794	palmitate biosynthesis	95.45	21 of 22
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	photosynthesis	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
66794	threonine metabolism	80	8 of 10
66794	methylglyoxal degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	NAD metabolism	66.67	12 of 18
66794	enterobactin biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	d-mannose degradation	66.67	6 of 9
66794	alanine metabolism	65.52	19 of 29
66794	methionine metabolism	65.38	17 of 26
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	purine metabolism	62.77	59 of 94
66794	gluconeogenesis	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	hydrogen production	60	3 of 5
66794	flavin biosynthesis	60	9 of 15
66794	cellulose degradation	60	3 of 5
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	propanol degradation	57.14	4 of 7
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	leucine metabolism	53.85	7 of 13
66794	pyrimidine metabolism	53.33	24 of 45
66794	glycolysis	52.94	9 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	adipate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	heme metabolism	50	7 of 14
66794	sulfopterin metabolism	50	2 of 4
66794	non-pathway related	50	19 of 38
66794	cysteine metabolism	50	9 of 18
66794	glycogen biosynthesis	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	histidine metabolism	48.28	14 of 29
66794	polyamine pathway	47.83	11 of 23
66794	lysine metabolism	47.62	20 of 42
66794	oxidative phosphorylation	47.25	43 of 91
66794	sulfate reduction	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	vitamin B6 metabolism	45.45	5 of 11
66794	tryptophan metabolism	44.74	17 of 38
66794	nitrate assimilation	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	starch degradation	40	4 of 10
66794	Entner Doudoroff pathway	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	pentose phosphate pathway	36.36	4 of 11
66794	glutathione metabolism	35.71	5 of 14
66794	cyanate degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	lipid metabolism	32.26	10 of 31
66794	urea cycle	30.77	4 of 13
66794	propionate fermentation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	degradation of hexoses	22.22	4 of 18

Fatty acid profile

Metadata FA analysis

@ref

57546

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	46.3	17.824
C16:0	32.2	16
C14:0	4.7	14
C16:1 ω7c	4	15.819
C14:0 3OH/C16:1 ISO I	3.3	15.485
C16:0 3OH	2.5	17.52
C15:0	1.4	15
unknown 14.503	1	14.503
C18:0	1	18
C17:0	0.8	17
C17:1 ω6c	0.7	16.862
C18:2 ω6,9c/C18:0 ANTE	0.6	17.724
C13:1 at 12-13	0.5	12.931
C15:0 3OH	0.5	16.504
C17:1 ω8c	0.4	16.792

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Infection	#Disease	-
#Infection	#Patient	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
57546	Human feces,diarrheic patient	Canada	CAN	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM16257v1 assembly for Helicobacter canadensis MIT 98-5491	chromosome	GCA_000162575	537970.14	2806310687	537970	88.31
66792	ASM15545v1 assembly for Helicobacter canadensis MIT 98-5491	scaffold	GCA_000155455	537970.13	643886213	537970	53.62

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Helicobacter canadensis partial 16S rRNA gene, type strain CCUG 47163T	AM998803	1471		123841

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Helicobacter canadensis MIT 98-5491
PATRIC: 537970.13

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	no	67.00	no
125439	gram_stain	BacteriaNetⓘ	negative	98.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	80.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Avian reservoirs and zoonotic potential of the emerging human pathogen Helicobacter canadensis.	Waldenstrom J, On SL, Ottvall R, Hasselquist D, Harrington CS, Olsen B.	Appl Environ Microbiol	10.1128/aem.69.12.7523-7526.2003	2003
Genetics	Insights into Functions of Universal Stress Proteins Encoded by Genomes of Gastric Cancer Pathogen Helicobacter pylori and Related Bacteria.	Isokpehi RD, Simmons SS, Makolo AU, Hollman AL, Adesida SA, Ojo OO, Abioye AO.	Pathogens	10.3390/pathogens14030275	2025
Enzymology	Atypical Helicobacter canadensis strains associated with swine.	Inglis GD, McConville M, de Jong A.	Appl Environ Microbiol	10.1128/aem.02843-05	2006
Phylogeny	Diagnosis of Genus Helicobacter through a hemi-nested PCR assay of 16S rRNA.	Qin H, Tang G, Yi P, Pan X, Huang H, Chang R, Shi Z, Ashraf MA.	Saudi Pharm J	10.1016/j.jsps.2016.04.015	2016
Phylogeny	Detection of Campylobacter in stool and determination of significance by culture, enzyme immunoassay, and PCR in developing countries.	Platts-Mills JA, Liu J, Gratz J, Mduma E, Amour C, Swai N, Taniuchi M, Begum S, Penataro Yori P, Tilley DH, Lee G, Shen Z, Whary MT, Fox JG, McGrath M, Kosek M, Haque R, Houpt ER.	J Clin Microbiol	10.1128/jcm.02935-13	2014
Enzymology	Enterohepatic helicobacter in ulcerative colitis: potential pathogenic entities?	Thomson JM, Hansen R, Berry SH, Hope ME, Murray GI, Mukhopadhya I, McLean MH, Shen Z, Fox JG, El-Omar E, Hold GL.	PLoS One	10.1371/journal.pone.0017184	2011
Enzymology	A comprehensive evaluation of colonic mucosal isolates of Sutterella wadsworthensis from inflammatory bowel disease.	Mukhopadhya I, Hansen R, Nicholl CE, Alhaidan YA, Thomson JM, Berry SH, Pattinson C, Stead DA, Russell RK, El-Omar EM, Hold GL.	PLoS One	10.1371/journal.pone.0027076	2011
Phylogeny	Helicobacter canadensis sp. nov. isolated from humans with diarrhea as an example of an emerging pathogen.	Fox JG, Chien CC, Dewhirst FE, Paster BJ, Shen Z, Melito PL, Woodward DL, Rodgers FG.	J Clin Microbiol	10.1128/jcm.38.7.2546-2549.2000	2000

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#57546	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47163
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Helicobacter canadensis (CCUG 47163, ATCC 700968)

Name and taxonomic classification