Strain identifier
BacDive ID: 152593
Type strain: 
Species: Helicobacter canadensis
NCBI tax ID(s): 537970 (strain), 123841 (species)
version 8.1 (current version)
General
@ref: 57546
BacDive-ID: 152593
keywords: genome sequence, Bacteria, microaerophile
description: Helicobacter canadensis CCUG 47163 is a microaerophile bacterium that was isolated from Human feces,diarrheic patient.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 123841 | species |
| 537970 | strain |
doi: 10.13145/bacdive152593.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter canadensis
- full scientific name: Helicobacter canadensis Fox et al. 2002
synonyms
- @ref: 20215
- synonym: Pseudohelicobacter canadensis
@ref: 57546
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter canadensis
type strain: yes
Morphology
colony morphology
- @ref: 57546
- incubation period: 2-3 days
Culture and growth conditions
culture temp
- @ref: 57546
- growth: positive
- type: growth
- temperature: 37-42
Physiology and metabolism
oxygen tolerance
- @ref: 57546
- oxygen tolerance: microaerophile
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 57546 C14:0 4.7 14 57546 C15:0 1.4 15 57546 C16:0 32.2 16 57546 C17:0 0.8 17 57546 C18:0 1 18 57546 C13:1 at 12-13 0.5 12.931 57546 C14:0 3OH/C16:1 ISO I 3.3 15.485 57546 C15:0 3OH 0.5 16.504 57546 C16:0 3OH 2.5 17.52 57546 C16:1 ω7c 4 15.819 57546 C17:1 ω6c 0.7 16.862 57546 C17:1 ω8c 0.4 16.792 57546 C18:1 ω7c /12t/9t 46.3 17.824 57546 C18:2 ω6,9c/C18:0 ANTE 0.6 17.724 57546 unknown 14.503 1 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 57546
- sample type: Human feces,diarrheic patient
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Infection | #Disease | |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Helicobacter canadensis MIT 98-5491 | 537970.13 | wgs | patric | 537970 |
| 66792 | Helicobacter canadensis MIT 98-5491, ATCC 700968 | 2806310687 | complete | img | 537970 |
| 66792 | Helicobacter canadensis MIT 98-5491, ATCC 700968 | 643886213 | draft | img | 537970 |
External links
@ref: 57546
culture collection no.: CCUG 47163, ATCC 700968
straininfo link
- @ref: 106539
- straininfo: 100683
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 57546 | Curators of the CCUG | https://www.ccug.se/strain?id=47163 | Culture Collection University of Gothenburg (CCUG) (CCUG 47163) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 106539 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID100683.1 |