Strain identifier

BacDive ID: 152593

Type strain: Yes

Species: Helicobacter canadensis

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 57546

BacDive-ID: 152593

keywords: microaerophile, Bacteria, genome sequence

description: Helicobacter canadensis CCUG 47163 is a microaerophile bacterium that was isolated from Human feces,diarrheic patient.

NCBI tax id

NCBI tax idMatching level
537970strain
123841species

doi: 10.13145/bacdive152593.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter canadensis
  • full scientific name: Helicobacter canadensis Fox et al. 2002
  • synonyms

    • @ref: 20215
    • synonym: Pseudohelicobacter canadensis

@ref: 57546

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter canadensis

type strain: yes

Morphology

colony morphology

  • @ref: 57546
  • incubation period: 2-3 days

Culture and growth conditions

culture temp

  • @ref: 57546
  • growth: positive
  • type: growth
  • temperature: 37-42

Physiology and metabolism

oxygen tolerance

  • @ref: 57546
  • oxygen tolerance: microaerophile

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57546C14:04.714
    57546C15:01.415
    57546C16:032.216
    57546C17:00.817
    57546C18:0118
    57546C13:1 at 12-130.512.931
    57546C14:0 3OH/C16:1 ISO I3.315.485
    57546C15:0 3OH0.516.504
    57546C16:0 3OH2.517.52
    57546C16:1 ω7c415.819
    57546C17:1 ω6c0.716.862
    57546C17:1 ω8c0.416.792
    57546C18:1 ω7c /12t/9t46.317.824
    57546C18:2 ω6,9c/C18:0 ANTE0.617.724
    57546unknown 14.503114.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

  • @ref: 57546
  • sample type: Human feces,diarrheic patient
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Infection#Disease
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter canadensis MIT 98-5491537970.13wgspatric537970
66792Helicobacter canadensis MIT 98-5491, ATCC 7009682806310687completeimg537970
66792Helicobacter canadensis MIT 98-5491, ATCC 700968643886213draftimg537970

External links

@ref: 57546

culture collection no.: CCUG 47163, ATCC 700968

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57546Curators of the CCUGhttps://www.ccug.se/strain?id=47163Culture Collection University of Gothenburg (CCUG) (CCUG 47163)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880