Corynebacterium matruchotii CCUG 47160 is an aerobe bacterium that was isolated from Human supragingival plaque in healthy periodontium.
aerobe genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Corynebacteriaceae |
| Genus Corynebacterium |
| Species Corynebacterium matruchotii |
| Full scientific name Corynebacterium matruchotii (Mendel 1919) Collins 1983 |
| Synonyms (2) |
| BacDive ID | Other strains from Corynebacterium matruchotii (3) | Type strain |
|---|---|---|
| 3102 | C. matruchotii 47, DSM 20635, ATCC 14266, DSM 43761, NCTC ... (type strain) | |
| 173164 | C. matruchotii CIMB 04-3570, CRBIP17.61 | |
| 178657 | C. matruchotii 1393-096, ST032395 |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 57545 | positive | growth | 37 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68381 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32STR |
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68379 | 17634 ChEBI | D-glucose | + | fermentation | from API Coryne |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68380 | 16024 ChEBI | D-mannose | + | fermentation | from API rID32A |
| 68381 | 16988 ChEBI | D-ribose | + | builds acid from | from API rID32STR |
| 68379 | 16988 ChEBI | D-ribose | + | fermentation | from API Coryne |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | + | hydrolysis | from API Coryne |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68381 | 606565 ChEBI | hippurate | + | hydrolysis | from API rID32STR |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68381 | 17716 ChEBI | lactose | - | builds acid from | from API rID32STR |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68381 | 17306 ChEBI | maltose | - | builds acid from | from API rID32STR |
| 68379 | 17306 ChEBI | maltose | + | fermentation | from API Coryne |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68381 | 28053 ChEBI | melibiose | - | builds acid from | from API rID32STR |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | + | builds acid from | from API rID32STR |
| 68380 | 17632 ChEBI | nitrate | + | reduction | from API rID32A |
| 68379 | 17632 ChEBI | nitrate | + | reduction | from API Coryne |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 68381 | 16634 ChEBI | raffinose | - | builds acid from | from API rID32STR |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68381 | 17992 ChEBI | sucrose | + | builds acid from | from API rID32STR |
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68381 | 27082 ChEBI | trehalose | - | builds acid from | from API rID32STR |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68381 | 16199 ChEBI | urea | - | hydrolysis | from API rID32STR |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | from API rID32STR | |
| 68380 | 35581 ChEBI | indole | from API rID32A |
| @ref | Chebi-ID | Metabolite | Voges-proskauer-test | Indole test | |
|---|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | + | from API rID32STR | |
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68380 | alanine arylamidase | + | 3.4.11.2 | from API rID32A |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68381 | alkaline phosphatase | - | 3.1.3.1 | from API rID32STR |
| 68380 | alkaline phosphatase | - | 3.1.3.1 | from API rID32A |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68381 | alpha-galactosidase | - | 3.2.1.22 | from API rID32STR |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68380 | alpha-glucosidase | + | 3.2.1.20 | from API rID32A |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68381 | arginine dihydrolase | - | 3.5.3.6 | from API rID32STR |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68381 | beta-galactosidase | - | 3.2.1.23 | from API rID32STR |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68381 | beta-glucosidase | - | 3.2.1.21 | from API rID32STR |
| 68380 | beta-glucosidase | + | 3.2.1.21 | from API rID32A |
| 68379 | beta-glucosidase | + | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 68379 | catalase | + | 1.11.1.6 | from API Coryne |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68379 | gelatinase | - | from API Coryne | |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | + | from API rID32A | |
| 68381 | glycyl tryptophan arylamidase | - | from API rID32STR | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | + | from API rID32A | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68380 | leucine arylamidase | + | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 | from API rID32A |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32STR |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 68380 | phenylalanine arylamidase | + | from API rID32A | |
| 68380 | proline-arylamidase | + | 3.4.11.5 | from API rID32A |
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API rID32STR |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | + | from API rID32A | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | + | from API rID32A | |
| 68381 | urease | - | 3.5.1.5 | from API rID32STR |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| 68382 | valine arylamidase | - | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||
| @ref | 57545 | ||||||||||||||||||||||||
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| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57545 | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | - | + | + | - | + | - | - | + | - | - | - | - | - | + | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body-Site | #Oral cavity and airways | #Plaque | |
| #Infection | #Patient | - |
| @ref | Sample type | Host species | |
|---|---|---|---|
| 57545 | Human supragingival plaque in healthy periodontium | Homo sapiens |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM15863v1 assembly for Corynebacterium matruchotii ATCC 33806 | scaffold | 566549 | 66.38 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | gram_stain | BacteriaNetⓘ | positive | 98.30 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 98.95 | no |
| 125439 | motility | BacteriaNetⓘ | no | 99.28 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 68.45 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 90.12 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 91.68 | yes |
| 125438 | aerobic | aerobicⓘ | no | 54.85 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 73.42 | no |
| 125438 | thermophilic | thermophileⓘ | no | 91.89 | no |
| 125438 | flagellated | motile2+ⓘ | no | 93.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Laser-assisted microbial culturomics. | Qu T, Koch L, Mukherjee R, Tu Y, Seidel AL, Puttmann LD, Winkel A, Yang I, Grischke J, Liu D, Wolkers WF, Kittler S, Chichkov B, Stiesch M, Szafranski SP. | Nat Commun | 10.1038/s41467-025-66804-7 | 2025 | ||
| Commensal Neisseria Inhibit Porphyromonas Gingivalis Invasion of Gingival Epithelial Cells. | Fukuda S, Akatsu T, Fujii A, Kawano S, Minegishi Y, Ota N. | Oral Health Prev Dent | 10.3290/j.ohpd.b5866430 | 2024 | ||
| Antibacterial Efficacy Comparison of Electrolytic and Reductive Silver Nanoparticles Against Propionibacterium acnes. | Suparno S, Prasetyowati R, Aziz KN, Rahma A, Lestari ESA, Nabiilah SC, Grace D. | Antibiotics (Basel) | 10.3390/antibiotics14010086 | 2025 | ||
| Structure of the LPS O-chain from Fusobacterium nucleatum strain ATCC 23726 containing a novel 5,7-diamino-3,5,7,9-tetradeoxy-l-gluco-non-2-ulosonic acid presumably having the d-glycero-l-gluco configuration. | Vinogradov E, St Michael F, Cox AD. | Carbohydr Res | 10.1016/j.carres.2018.08.011 | 2018 | ||
| Impact of HIV on the Oral Microbiome of Children Living in Sub-Saharan Africa, Determined by Using an rpoC Gene Fragment Metataxonomic Approach. | Mann AE, O'Connell LM, Osagie E, Akhigbe P, Obuekwe O, Omoigberale A, Kelly C, DOMHaIN Study Team, Coker MO, Richards VP. | Microbiol Spectr | 10.1128/spectrum.00871-23 | 2023 | ||
| Metabolism | Sulphate production by Paracoccus pantotrophus ATCC 35512 from different sulphur substrates: sodium thiosulphate, sulphite and sulphide. | Meyer DD, Andrino FG, Possedente de Lira S, Fornaro A, Corcao G, Brandelli A. | Environ Technol | 10.1080/09593330.2015.1081411 | 2016 | |
| Genetics | Further Identification of Novel Lantibiotic Operons Using LanM-Based Genome Mining. | O'Sullivan O, Begley M, Ross RP, Cotter PD, Hill C. | Probiotics Antimicrob Proteins | 10.1007/s12602-011-9062-y | 2011 | |
| Phylogenetic Analysis of Filifactor alocis Strains Isolated from Several Oral Infections Identified a Novel RTX Toxin, FtxA. | Oscarsson J, Claesson R, Bao K, Brundin M, Belibasakis GN. | Toxins (Basel) | 10.3390/toxins12110687 | 2020 | ||
| Staphylococcus saccharolyticus: An Overlooked Human Skin Colonizer. | Ahle CM, Stodkilde K, Afshar M, Poehlein A, Ogilvie LA, Soderquist B, Hupeden J, Bruggemann H. | Microorganisms | 10.3390/microorganisms8081105 | 2020 | ||
| Genetics | BAGEL2: mining for bacteriocins in genomic data. | de Jong A, van Heel AJ, Kok J, Kuipers OP. | Nucleic Acids Res | 10.1093/nar/gkq365 | 2010 | |
| Phylogeny | Diversity within reference strains of Corynebacterium matruchotii includes Corynebacterium durum and a novel organism. | Barrett SL, Cookson BT, Carlson LC, Bernard KA, Coyle MB. | J Clin Microbiol | 10.1128/jcm.39.3.943-948.2001 | 2001 | |
| Enzymology | Growth and nitrite and nitrous oxide accumulation of Paracoccus denitrificans ATCC 19367 in the presence of selected pesticides. | Saez F, Pozo C, Gomez MA, Rodelas B, Gonzalez-Lopez J. | Environ Toxicol Chem | 10.1897/02-351 | 2003 | |
| Genome-resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep-sea hydrothermal vents. | Galambos D, Anderson RE, Reveillaud J, Huber JA. | Environ Microbiol | 10.1111/1462-2920.14806 | 2019 | ||
| Comparison of adherent and non-adherent staphylococci in the induction of polymorphonuclear leukocyte activation in vitro. | Riber U, Espersen F, Kharazmi A. | APMIS | 10.1111/j.1699-0463.1995.tb01130.x | 1995 | ||
| Induction of oxidative burst response in human neutrophils by adherent staphylococci. Comparison between Staphylococcus epidermidis and Staphylococcus aureus. | Riber U, Espersen F, Skinhoj P, Kharazmi A. | APMIS | 10.1111/j.1699-0463.1993.tb00081.x | 1993 | ||
| Profiling of Oral Microbiota in Early Childhood Caries Using Single-Molecule Real-Time Sequencing. | Wang Y, Zhang J, Chen X, Jiang W, Wang S, Xu L, Tu Y, Zheng P, Wang Y, Lin X, Chen H. | Front Microbiol | 10.3389/fmicb.2017.02244 | 2017 | ||
| Pathogenicity | Staphylococcal persistence due to biofilm formation in synovial fluid containing prophylactic cefazolin. | Dastgheyb SS, Hammoud S, Ketonis C, Liu AY, Fitzgerald K, Parvizi J, Purtill J, Ciccotti M, Shapiro IM, Otto M, Hickok NJ. | Antimicrob Agents Chemother | 10.1128/aac.04579-14 | 2015 | |
| Metabolism | Streptococcus gordonii Type I Lipoteichoic Acid Contributes to Surface Protein Biogenesis. | Lima BP, Kho K, Nairn BL, Davies JR, Svensater G, Chen R, Steffes A, Vreeman GW, Meredith TC, Herzberg MC. | mSphere | 10.1128/msphere.00814-19 | 2019 | |
| Metabolism | Two-component signal transduction in Corynebacterium glutamicum and other corynebacteria: on the way towards stimuli and targets. | Bott M, Brocker M. | Appl Microbiol Biotechnol | 10.1007/s00253-012-4060-x | 2012 | |
| Proteome | Assessment of marker proteins identified in whole cell extracts for bacterial speciation using liquid chromatography electrospray ionization tandem mass spectrometry. | Kooken J, Fox K, Fox A, Wunschel D. | Mol Cell Probes | 10.1016/j.mcp.2013.08.002 | 2014 | |
| Phylogeny | Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria. | Brinkhoff T, Fischer D, Vollmers J, Voget S, Beardsley C, Thole S, Mussmann M, Kunze B, Wagner-Dobler I, Daniel R, Simon M. | ISME J | 10.1038/ismej.2011.190 | 2012 | |
| Metabolism | Potential role of nitrite for abiotic Fe(II) oxidation and cell encrustation during nitrate reduction by denitrifying bacteria. | Klueglein N, Zeitvogel F, Stierhof YD, Floetenmeyer M, Konhauser KO, Kappler A, Obst M. | Appl Environ Microbiol | 10.1128/aem.03277-13 | 2014 | |
| Transcriptome | Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing. | Xie G, Chain PS, Lo CC, Liu KL, Gans J, Merritt J, Qi F. | Mol Oral Microbiol | 10.1111/j.2041-1014.2010.00587.x | 2010 | |
| Genetics | Microvirga massiliensis sp. nov., the human commensal with the largest genome. | Caputo A, Lagier JC, Azza S, Robert C, Mouelhi D, Fournier PE, Raoult D. | Microbiologyopen | 10.1002/mbo3.329 | 2016 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #57545 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47160 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68379 | Automatically annotated from API Coryne . |
| #68380 | Automatically annotated from API rID32A . |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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