Name: Streptomyces diastaticus DSM 40496
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15123

Type strain:

Species: Streptomyces diastaticus

Culture col. no.: DSM 40496, ATCC 3315, CBS 713.72, IFO 13412, IFO 3714, ISP 5496, JCM 4128, JCM 4745, NBRC 13412, NBRC 3714, NRRL B-1270, RIA 1373, BCRC 15168, CBS 126.20, CCM 3167, CCUG 11116, CGMCC 4.1420, IMET 40274, LMG 19322, MTCC 1394, NRRL B-1241, RIA 104, VKM Ac-723

Strain history: KCC S-0128 <-- M. Mayama <-- ATCC 3315 <-- S. A. Waksman.

NCBI tax ID(s): 1956 (species)

SI-ID 14106

LMG 19322, ATCC 3315, CCUG 11116, DSM 40496, IFO 13412, IFO 3714, IMET 40274, JCM 4128, JCM 4745, NRRL B-1241, NRRL B-1270, VKM Ac-723, CCM 3167, CBS 713.72, CBS 126.20, AS 4.1420, NBRC 13412, NBRC 3714, ICMP 500, BCRC 15168, CCRC 15168, CGMCC 4.1420

Section

Streptomyces diastaticus DSM 40496 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces diastaticus**
	Full Scientific Name (LPSN)	Streptomyces diastaticus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	"Actinomyces* diastaticus"*
	Synonym	"Actinomyces* rutgersensis"*
	Synonym	"Actinomyces* gougeroti"*
	Synonym	Streptomyces gougerotii
	Synonym	Streptomyces rutgersensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19466]	Colony color	Yellow
[Ref.: #19466]	Incubation period	10-14 days
[Ref.: #19466]	Cultivation medium used	ISP 2

[Ref.: #19466]	Colony color	Beige
[Ref.: #19466]	Incubation period	10-14 days
[Ref.: #19466]	Cultivation medium used	ISP 3

[Ref.: #19466]	Colony color	Beige
[Ref.: #19466]	Incubation period	10-14 days
[Ref.: #19466]	Cultivation medium used	ISP 4

[Ref.: #19466]	Colony color	Beige
[Ref.: #19466]	Incubation period	10-14 days
[Ref.: #19466]	Cultivation medium used	ISP 5

[Ref.: #19466]	Multicellular complex forming ability	yes
[Ref.: #19466]	Multicellular complex name	Aerial Mycelium
[Ref.: #19466]	Multicellular complex color	Yellow
[Ref.: #19466]	Medium Name (multicellularity)	ISP 2

[Ref.: #19466]	Multicellular complex forming ability	yes
[Ref.: #19466]	Multicellular complex name	Aerial Mycelium
[Ref.: #19466]	Multicellular complex color	White
[Ref.: #19466]	Medium Name (multicellularity)	ISP 3

[Ref.: #19466]	Multicellular complex forming ability	yes
[Ref.: #19466]	Multicellular complex name	Aerial Mycelium
[Ref.: #19466]	Multicellular complex color	Beige
[Ref.: #19466]	Medium Name (multicellularity)	ISP 4

[Ref.: #19466]	Multicellular complex forming ability	yes
[Ref.: #19466]	Multicellular complex name	Aerial Mycelium
[Ref.: #19466]	Multicellular complex color	White
[Ref.: #19466]	Medium Name (multicellularity)	ISP 5

[Ref.: #19466]	Multicellular complex forming ability	no
[Ref.: #19466]	Medium Name (multicellularity)	ISP 6

[Ref.: #19466]	Multicellular complex forming ability	no
[Ref.: #19466]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9599]	growth	28 °C
[Ref.: #19466]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9599]	Temperature range	mesophilic
[Ref.: #19466]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19466]	Spore description	Formation of spore chains (rectiflixibilis), spore surface smooth
[Ref.: #19466]	Type of spore	spore
[Ref.: #19466]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19466]		NaCl		maximum	5	%

	Metabolite	Utilization activity
[Ref.: #19466]	arabinose ChEBI	+
[Ref.: #19466]	fructose ChEBI	+
[Ref.: #19466]	glucose ChEBI	+
[Ref.: #19466]	mannitol ChEBI	+
[Ref.: #19466]	myo-inositol ChEBI	-
[Ref.: #19466]	raffinose ChEBI	-
[Ref.: #19466]	rhamnose ChEBI	-
[Ref.: #19466]	sucrose ChEBI	+
[Ref.: #19466]	xylose ChEBI	+

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9599]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19466]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces diastaticus partial 16S rRNA	X53161	1354	ENA	1956 tax ID	*
[Ref.: #20218]	Streptomyces diastaticus subsp. diastaticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4745	D44329	120	ENA	68040 tax ID	*
[Ref.: #20218]	Streptomyces diastaticus subsp. diastaticus gene for 16S rRNA, partial sequence, strain: NBRC 13412	AB184386	1446	ENA	68040 tax ID	*
[Ref.: #20218]	Streptomyces diastaticus subsp. diastaticus gene for 16S rRNA, partial sequence, strain: NBRC 3714	AB184785	1478	ENA	68040 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces diastaticus subsp. diastaticus NBRC 13412	GCA_011170125	contig	GenBank	68040 tax ID
[Ref.: #66792]	Streptomyces diastaticus subsp. diastaticus JCM 4128	GCA_014648935	scaffold	GenBank	68040 tax ID	*
[Ref.: #66792]	Streptomyces diastaticus subsp. diastaticus strain JCM 4128	68040.4	wgs	PATRIC	68040 tax ID	*
[Ref.: #66792]	Streptomyces diastaticus subsp. diastaticus strain NBRC 13412	68040.3	wgs	PATRIC	68040 tax ID	*

[Ref.: #67770]

GC-content

73.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces diastaticus subsp. diastaticus JCM 4128 NCBI: GCA_014648935.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces diastaticus subsp. diastaticus JCM 4128 NCBI: GCA_014648935.1
[Ref.: #69480]	flagellated	no	97.463	no
[Ref.: #69480]	gram-positive	yes	91.576	no
[Ref.: #69480]	anaerobic	no	99.433	no
[Ref.: #69480]	aerobic	yes	93.686	no
[Ref.: #69480]	halophile	no	91.5	no
[Ref.: #69480]	spore-forming	yes	94.919	yes
[Ref.: #69480]	thermophile	no	98.137	no
[Ref.: #69480]	glucose-util	yes	89.643	yes
[Ref.: #69480]	motile	no	95.885	no
[Ref.: #69480]	glucose-ferment	no	87.824	no

Availability in culture collections External links

[Ref.: #9599]

Culture collection no.

DSM 40496, ATCC 3315, CBS 713.72, IFO 13412, IFO 3714, ISP 5496, JCM 4128, JCM 4745, NBRC 13412, NBRC 3714, NRRL B-1270, RIA 1373, BCRC 15168, CBS 126.20, CCM 3167, CCUG 11116, CGMCC 4.1420, IMET 40274, LMG 19322, MTCC 1394, NRRL B-1241, RIA 104, VKM Ac-723

[Ref.: #84228]

SI-ID 14106

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Streptomyces diastaticus subsp. ardesiacus, Streptomyces gougerotii and Streptomyces rutgersensis.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004287	2020	*
Phylogeny	Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).	Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0021-3	2013	*

References

#9599

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40496

#19466

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84228

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14106.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces diastaticus subsp. diastaticus JCM 4128

Streptomyces diastaticus subsp. diastaticus JCM 4128

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