Name: Streptomyces cinnabarinus DSM 40467
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15096

Type strain:

Species: Streptomyces cinnabarinus

Culture col. no.: DSM 40467, ATCC 23617, CBS 671.69, IFO 13028, INA 1242, ISP 5467, NBRC 13028, RIA 1220, JCM 4463, ATCC 25440, BCRC 15162, CGMCC 4.1590, NRRL B-12382, PCM 2311, VKM Ac-1904

Strain history: KCC S-0463 <-- IFO 13028 <-- SAJ <-- ISP 5467 <-- INA 1242.

NCBI tax ID(s): 67287 (species)

SI-ID 38129

ATCC 25440, CBS 671.69

Special Collections

Section

Streptomyces cinnabarinus DSM 40467 is a spore-forming bacterium that builds an aerial mycelium and was isolated from soil of hot climate area.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces cinnabarinus**
	Full Scientific Name (LPSN)	Streptomyces cinnabarinus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces cinnabarinus"

Information on morphological and physiological properties Morphology

[Ref.: #19459]	Colony color	Brown red
[Ref.: #19459]	Incubation period	10-14 days
[Ref.: #19459]	Cultivation medium used	ISP 2

[Ref.: #19459]	Colony color	Salmon red
[Ref.: #19459]	Incubation period	10-14 days
[Ref.: #19459]	Cultivation medium used	ISP 3

[Ref.: #19459]	Colony color	Salmon red
[Ref.: #19459]	Incubation period	10-14 days
[Ref.: #19459]	Cultivation medium used	ISP 4

[Ref.: #19459]	Colony color	Salmon red
[Ref.: #19459]	Incubation period	10-14 days
[Ref.: #19459]	Cultivation medium used	ISP 5

[Ref.: #19459]	Colony color	Olive drab
[Ref.: #19459]	Incubation period	10-14 days
[Ref.: #19459]	Cultivation medium used	ISP 6

[Ref.: #19459]	Colony color	Salmon red
[Ref.: #19459]	Incubation period	10-14 days
[Ref.: #19459]	Cultivation medium used	ISP 7

[Ref.: #19459]	Multicellular complex forming ability	yes
[Ref.: #19459]	Multicellular complex name	Aerial Mycelium
[Ref.: #19459]	Multicellular complex color	Cream
[Ref.: #19459]	Medium Name (multicellularity)	ISP 2

[Ref.: #19459]	Multicellular complex forming ability	yes
[Ref.: #19459]	Multicellular complex name	Aerial Mycelium
[Ref.: #19459]	Multicellular complex color	Cream
[Ref.: #19459]	Medium Name (multicellularity)	ISP 3

[Ref.: #19459]	Multicellular complex forming ability	yes
[Ref.: #19459]	Multicellular complex name	Aerial Mycelium
[Ref.: #19459]	Multicellular complex color	Cream
[Ref.: #19459]	Medium Name (multicellularity)	ISP 4

[Ref.: #19459]	Multicellular complex forming ability	yes
[Ref.: #19459]	Multicellular complex name	Aerial Mycelium
[Ref.: #19459]	Medium Name (multicellularity)	ISP 5

[Ref.: #19459]	Multicellular complex forming ability	no
[Ref.: #19459]	Medium Name (multicellularity)	ISP 6

[Ref.: #19459]	Multicellular complex forming ability	yes
[Ref.: #19459]	Multicellular complex name	Aerial Mycelium
[Ref.: #19459]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9562]	growth	28 °C
[Ref.: #19459]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.235
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19459]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19459]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19459]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19459]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19459]	mannitol ChEBI	+
[Ref.: #19459]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19459]	raffinose ChEBI	+
[Ref.: #19459]	rhamnose ChEBI	+
[Ref.: #19459]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19459]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19459]	320	-	+	-	-	+	+	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19459]	365	not determinedn.d.	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9562]	Sample type/isolated from	soil of hot climate area

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Climate	#Hot	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9562]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19459]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces cinnabarinus partial 16S rRNA gene, strain ISP 5467	AJ399487	1448	GenBank ENA	67287 tax ID	*
[Ref.: #20218]	Streptomyces cinnabarinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4463	D44159	120	GenBank ENA	67287 tax ID	*
[Ref.: #20218]	Streptomyces cinnabarinus gene for 16S rRNA, partial sequence, strain: NBRC 13028	AB184266	1476	GenBank ENA	67287 tax ID	*
[Ref.: #20218]	Streptomyces cinnabarinus strain NRRL B-12382 16S ribosomal RNA gene, partial sequence	DQ026640	1493	GenBank ENA	67287 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces cinnabarinus NRRL B-12382	GCA_000715615	scaffold	GenBank ENA	67287 tax ID
[Ref.: #66792]	Streptomyces cinnabarinus DSM 40467	GCA_027270315	complete	GenBank ENA	67287 tax ID	*

[Ref.: #67770]	GC-content	70.7 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	70.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces cinnabarinus NRRL B-12382 NCBI: GCA_000715615.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces cinnabarinus DSM 40467 NCBI: GCA_027270315.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.039	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.822	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.919	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.235	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.5	no

Availability in culture collections External links

[Ref.: #9562]

Culture collection no.

DSM 40467, ATCC 23617, CBS 671.69, IFO 13028, INA 1242, ISP 5467, NBRC 13028, RIA 1220, JCM 4463, ATCC 25440, BCRC 15162, CGMCC 4.1590, NRRL B-12382, PCM 2311, VKM Ac-1904

[Ref.: #84202]	SI-ID 38129	*
[Ref.: #84203]	SI-ID 62733	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces fractus sp. nov., a novel streptomycete isolated from the gut of a South African termite.	Rohland J, Meyers PR	Antonie Van Leeuwenhoek	10.1007/s10482-015-0404-8	2015	*
Phylogeny	Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp. nov. and Streptomyces davaonensis sp. nov.	Landwehr W, Kampfer P, Glaeser SP, Ruckert C, Kalinowski J, Blom J, Goesmann A, Mack M, Schumann P, Atasayar E, Hahnke RL, Rohde M, Martin K, Stadler M, Wink J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002519	2017	*

References

#9562

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40467

#19459

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84202

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38129.1 )

#84203

* These data were automatically processed and therefore are not curated

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Streptomyces cinnabarinus NRRL B-12382

Streptomyces cinnabarinus DSM 40467

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