Streptomyces cinnabarinus (DSM 40467, ATCC 23617, CBS 671.69)

Name: Streptomyces cinnabarinus (DSM 40467, ATCC 23617, CBS 671.69)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15096

Type strain

Culture col. no. DSM 40467 ATCC 23617 CBS 671.69 IFO 13028 INA 1242 10 more

NCBI tax ID(s) 67287

Special Collections DSMZ JCM Wink compendium

History DSMZ <- E.B. Shirling, ISP <- G.F. Gauze, INA JCM <-- KCC S-0463 <-- IFO 13028 <-- SAJ <-- ISP 5467 <-- INA 1242.

Links

Streptomyces cinnabarinus DSM 40467 is a bacterium that builds an aerial mycelium and was isolated from soil of hot climate area.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 62733

ATCC 23617,IFO 13028,DSM 40467,JCM 4463,NRRL B-12382,JCM 4894,HUT 6202,IFO 13669,VKM Ac-1904,AS 4.159,NBRC 13028,NBRC 13669,AS 4.1590,BCRC 15162,CCRC 15162,CGMCC 4.0159,CGMCC 4.1590

@ref 20215

Last LPSN update 2026-05-29 08:28:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces cinnabarinus

Full scientific name Streptomyces cinnabarinus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonyms (1)

"Actinomyces cinnabarinus"

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		93.575
125439		99.21	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
19459	Brown red	10-14 days	ISP 2
19459	Salmon red	10-14 days	ISP 3
19459	Salmon red	10-14 days	ISP 4
19459	Salmon red	10-14 days	ISP 5
19459	Olive drab	10-14 days	ISP 6
19459	Salmon red	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
19459	Aerial Mycelium	Cream	ISP 2
19459	Aerial Mycelium	Cream	ISP 3
19459	Aerial Mycelium	Cream	ISP 4
19459	Aerial Mycelium		ISP 5
19459			ISP 6
19459	Aerial Mycelium		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9562	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19459	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19459	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19459	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19459	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19459	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19459	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
9562	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9562	positive	growth	28
19459	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.268

Spore formation

@ref	Spore formation	Confidence
125438		91.235

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19459	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
19459	62968 ChEBI	cellulose	+
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
19459	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
19459	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
19459	29864 ChEBI	mannitol	+
19459	17268 ChEBI	myo-inositol	+
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
19459	16634 ChEBI	raffinose	+
19459	26546 ChEBI	rhamnose	+
19459	17992 ChEBI	sucrose	+
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
19459	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68368	gelatinase	+		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68382	trypsin	+	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19459	-	+	-	-	+	+	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19459	not determinedn.d.	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	+	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code
9562	soil of hot climate area
67770	Soil	Russia	RUS

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9562	1	Risk group (German classification) According to TRBA 466
19459	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2727031v1 assembly for Streptomyces cinnabarinus DSM 40467	complete	GCA_027270315	67287.7	8047163983	67287	99.43
67770	ASM71561v1 assembly for Streptomyces cinnabarinus NRRL B-12382	scaffold	GCA_000715615	67287.3	2775507082	67287	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces cinnabarinus partial 16S rRNA gene, strain ISP 5467	AJ399487	1448	67287
20218	Streptomyces cinnabarinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4463	D44159	120	67287
20218	Streptomyces cinnabarinus gene for 16S rRNA, partial sequence, strain: NBRC 13028	AB184266	1476	67287
20218	Streptomyces cinnabarinus strain NRRL B-12382 16S ribosomal RNA gene, partial sequence	DQ026640	1493	67287

GC content

@ref	GC-content (mol%)	Method
67770	70.7	genome sequence analysis
67770	70.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2727031v1 assembly for Streptomyces cinnabarinus DSM 40467
NCBI: GCA_027270315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.27	no
125439	gram_stain	BacteriaNetⓘ	positive	99.21	no
125439	spore_formation	BacteriaNetⓘ	yes	88.75	no
125439	motility	BacteriaNetⓘ	no	93.58	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces cinnabarinus DSM 40467
NCBI: GCA_027270315.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.04	no
125438	anaerobic	anaerobicⓘ	no	96.82	no
125438	aerobic	aerobicⓘ	yes	87.92	no
125438	spore-forming	spore-formingⓘ	yes	91.24	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.	Jankowitsch F, Schwarz J, Ruckert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M.	J Bacteriol	10.1128/jb.01592-12	2012
	Mechanistic Insights into Roseoflavin Synthesis by N,N-8-Demethyl-8-aminoriboflavin Dimethyltransferase (RosA): Molecular Dynamics Simulations and Residue Conservation Analysis.	Charoenwongpaiboon T, Klaewkla M, Chaiyen P, Tongsook C.	J Chem Inf Model	10.1021/acs.jcim.3c00655	2023
	Production of the Antimicrobial Roseoflavin With Genetically Engineered Corynebacterium glutamicum.	Brito LF, Aas AB, Rudberg RJ, Brautaset T, Perez-Garcia F.	Microb Biotechnol	10.1111/1751-7915.70246	2025
Metabolism	Effects of Magnaporthe oryzae cell-free filtrate on the secondary metabolism of Streptomyces bikiniensis HD-087: a non-targeted metabolomics analysis.	Gang J, Tian Q, Du C.	Microb Cell Fact	10.1186/s12934-025-02711-2	2025
	Efficient production of bacterial antibiotics aminoriboflavin and roseoflavin in eukaryotic microorganisms, yeasts.	Dmytruk KV, Ruchala J, Fayura LR, Chrzanowski G, Dmytruk OV, Tsyrulnyk AO, Andreieva YA, Fedorovych DV, Motyka OI, Mattanovich D, Marx H, Sibirny AA.	Microb Cell Fact	10.1186/s12934-023-02129-8	2023
Metabolism	OPTIMIZATION OF THE CULTIVATION CONDITIONS AND THE BASIC MOLECULAR TOOLS FOR ROSEOFLAVIN PRODUCER STREPTOMYCES DAVAWENSIS.	Tsyrulnyk AO, Kordiaka R, Dmytruk KV, Fedorovych DV, Sybirny AA.	Mikrobiol Z	10.15407/microbiolj78.04.002	2016
	Dual-functionality of Nocardiopsis alba B57 in biocontrol and plant growth: a metabolomic approach to agricultural sustainability.	Abdalla Abdelshafy Mohamad O, Liu YH, Elsamahy T, Li S, Govindan R, Kuchkarova N, Hatab S, Zhang Y, Li WJ.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00796-6	2025
Metabolism	Identification of the Key Enzyme of Roseoflavin Biosynthesis.	Schwarz J, Konjik V, Jankowitsch F, Sandhoff R, Mack M.	Angew Chem Int Ed Engl	10.1002/anie.201600581	2016
Metabolism	Induction of antifouling diterpene production by Streptomyces cinnabarinus PK209 in co-culture with marine-derived Alteromonas sp. KNS-16.	Cho JY, Kim MS.	Biosci Biotechnol Biochem	10.1271/bbb.120221	2012
	Regulation of Riboflavin Biosynthesis in Microorganisms and Construction of the Advanced Overproducers of This Vitamin.	Ruchala J, Najdecka A, Wojdyla D, Liu W, Sibirny A.	Int J Mol Sci	10.3390/ijms26136243	2025
	Natural riboflavin analogs.	Pedrolli DB, Jankowitsch F, Schwarz J, Langer S, Nakanishi S, Mack M.	Methods Mol Biol	10.1007/978-1-4939-0452-5_3	2014
Biotechnology	Novel metabolite madeirone and neomarinone extracted from Streptomyces aculeoletus as marine antibiofilm and antifouling agents.	Wissner JL, Almeida JR, Grilo IR, Oliveira JF, Brizida C, Escobedo-Hinojosa W, Pissaridou P, Vasquez MI, Cunha I, Sobral RG, Vasconcelos V, Gaudencio SP.	Front Chem	10.3389/fchem.2024.1425953	2024
Metabolism	Metabolic engineering of roseoflavin-overproducing microorganisms.	Mora-Lugo R, Stegmuller J, Mack M.	Microb Cell Fact	10.1186/s12934-019-1181-2	2019
Metabolism	Uptake and Metabolism of Antibiotics Roseoflavin and 8-Demethyl-8-Aminoriboflavin in Riboflavin-Auxotrophic Listeria monocytogenes.	Matern A, Pedrolli D, Grosshennig S, Johansson J, Mack M.	J Bacteriol	10.1128/jb.00388-16	2016
	Bioinformatics and Genomic Analyses of the Suitability of Eight Riboswitches for Antibacterial Drug Targets.	Pavlova N, Penchovsky R.	Antibiotics (Basel)	10.3390/antibiotics11091177	2022
	A single change in the aptamer of the Lactiplantibacillus plantarum rib operon riboswitch severely impairs its regulatory activity and leads to a vitamin B₂ - overproducing phenotype.	Ripa I, Ruiz-Maso JA, De Simone N, Russo P, Spano G, Del Solar G.	Microb Biotechnol	10.1111/1751-7915.13919	2022
	Evolution of secondary metabolite genes in three closely related marine actinomycete species.	Freel KC, Nam SJ, Fenical W, Jensen PR.	Appl Environ Microbiol	10.1128/aem.05943-11	2011
	Antifouling Napyradiomycins from Marine-Derived Actinomycetes Streptomyces aculeolatus.	Pereira F, Almeida JR, Paulino M, Grilo IR, Macedo H, Cunha I, Sobral RG, Vasconcelos V, Gaudencio SP.	Mar Drugs	10.3390/md18010063	2020
Enzymology	Structural and kinetic studies on RosA, the enzyme catalysing the methylation of 8-demethyl-8-amino-d-riboflavin to the antibiotic roseoflavin.	Tongsook C, Uhl MK, Jankowitsch F, Mack M, Gruber K, Macheroux P.	FEBS J	10.1111/febs.13690	2016
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
	Streptomyces fuscus sp. nov., a brown-black pigment producing actinomycete isolated from dry mudflat sand.	Xie J, Zhang H, Xu X, Yang K, Ou J, Yang D, Jiang Y, Jiang M, Shen N.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006047	2023
Phylogeny	Isolation, characterisation and description of the roseoflavin producer Streptomyces berlinensis sp. nov.	Liunardo JJ, Messerli S, Gregotsch AK, Lang S, Schlosser K, Ruckert-Reed C, Busche T, Kalinowski J, Zischka M, Weller P, Nouioui I, Neumann-Schaal M, Risdian C, Wink J, Mack M.	Environ Microbiol Rep	10.1111/1758-2229.13266	2024
Metabolism	Streptomyces avermitilis sp. nov., nom. rev., a taxonomic home for the avermectin-producing streptomycetes.	Kim SB, Goodfellow M.	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2011	2002
Phylogeny	Streptomyces fractus sp. nov., a novel streptomycete isolated from the gut of a South African termite.	Rohland J, Meyers PR	Antonie Van Leeuwenhoek	10.1007/s10482-015-0404-8	2015
Phylogeny	Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp. nov. and Streptomyces davaonensis sp. nov.	Landwehr W, Kampfer P, Glaeser SP, Ruckert C, Kalinowski J, Blom J, Goesmann A, Mack M, Schumann P, Atasayar E, Hahnke RL, Rohde M, Martin K, Stadler M, Wink J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002519	2017

References

#9562	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40467
#19459	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Streptomyces cinnabarinus (DSM 40467, ATCC 23617, CBS 671.69)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_027270315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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