Name: Streptomyces celluloflavus DSM 40839
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15074

Type strain:

Species: Streptomyces celluloflavus

Culture col. no.: DSM 40839, ATCC 29806, CECT 7364, ETH 24125, IFO 13780, KCC S-0126, NBRC 13780, NIHJ 198, NRRL B-2493, JCM 4126, CECT 3242, CGMCC 4.1659, KCTC 9702, NBRC 100597, RIA 779, VKM Ac-1819, VTT E-86258

Strain history: KCC S-0126 <-- M. Mayama <-- M. Nishimura 39a.

NCBI tax ID(s): 58344 (species)

SI-ID 39731

ATCC 29806, IFO 13780, DSM 40839, NRRL B-2493, JCM 4126, CECT 3242, VTT E-86258, KCTC 9702, AS 4.1659, NBRC 13780, NBRC 100597, VKM Ac-1819, CGMCC 4.1659, CECT 7364

Special Collections

Section

Streptomyces celluloflavus DSM 40839 is a spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces celluloflavus**
	Full Scientific Name (LPSN)	Streptomyces celluloflavus Nishimura et al. 1953 (Approved Lists 1980)

Synonym

Streptomyces kasugaensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.765

[Ref.: #69480]	Motility	no Confidence in %90.088

[Ref.: #19491]	Colony color	Brown
[Ref.: #19491]	Incubation period	10-14 days
[Ref.: #19491]	Cultivation medium used	ISP 2

[Ref.: #19491]	Colony color	Beige
[Ref.: #19491]	Incubation period	10-14 days
[Ref.: #19491]	Cultivation medium used	ISP 3

[Ref.: #19491]	Colony color	Yellow
[Ref.: #19491]	Incubation period	10-14 days
[Ref.: #19491]	Cultivation medium used	ISP 4

[Ref.: #19491]	Colony color	Yellow
[Ref.: #19491]	Incubation period	10-14 days
[Ref.: #19491]	Cultivation medium used	ISP 5

[Ref.: #19491]	Colony color	Yellow
[Ref.: #19491]	Incubation period	10-14 days
[Ref.: #19491]	Cultivation medium used	ISP 6

[Ref.: #19491]	Colony color	Yellow
[Ref.: #19491]	Incubation period	10-14 days
[Ref.: #19491]	Cultivation medium used	ISP 7

[Ref.: #19491]	Multicellular complex forming ability	yes
[Ref.: #19491]	Multicellular complex name	Aerial Mycelium
[Ref.: #19491]	Multicellular complex color	White
[Ref.: #19491]	Medium Name (multicellularity)	ISP 2

[Ref.: #19491]	Multicellular complex forming ability	yes
[Ref.: #19491]	Multicellular complex name	Aerial Mycelium
[Ref.: #19491]	Multicellular complex color	White
[Ref.: #19491]	Medium Name (multicellularity)	ISP 3

[Ref.: #19491]	Multicellular complex forming ability	yes
[Ref.: #19491]	Multicellular complex name	Aerial Mycelium
[Ref.: #19491]	Multicellular complex color	White
[Ref.: #19491]	Medium Name (multicellularity)	ISP 4

[Ref.: #19491]	Multicellular complex forming ability	yes
[Ref.: #19491]	Multicellular complex name	Aerial Mycelium
[Ref.: #19491]	Multicellular complex color	Yellow
[Ref.: #19491]	Medium Name (multicellularity)	ISP 5

[Ref.: #19491]	Multicellular complex forming ability	no
[Ref.: #19491]	Medium Name (multicellularity)	ISP 6

[Ref.: #19491]	Multicellular complex forming ability	yes
[Ref.: #19491]	Multicellular complex name	Aerial Mycelium
[Ref.: #19491]	Multicellular complex color	Yellow
[Ref.: #19491]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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		Temperature
[Ref.: #9840]	growth	28 °C
[Ref.: #19491]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19491]	Spore description	Formation of spore chains (rectiflixibilis), spore surface smooth
[Ref.: #19491]	Type of spore	spore
[Ref.: #19491]	Ability of spore formation	yes

[Ref.: #9840]	Name of produced compound	aureothricin
[Ref.: #9840]	Name of produced compound	thiolutin
[Ref.: #20216]	Name of produced compound	aureothricin (=thiolutin)

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19491]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19491]	arabinose ChEBI	+/-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19491]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19491]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19491]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19491]	mannitol ChEBI	+
[Ref.: #19491]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19491]	raffinose ChEBI	+/-
[Ref.: #19491]	rhamnose ChEBI	+/-
[Ref.: #19491]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19491]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	aureothricin	yes
[Ref.: #67770]	thiolutin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19491]	349	-	-	-	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9840]	Sample type/isolated from	soil
[Ref.: #9840]	Country	Japan
[Ref.: #9840]	Country ISO 3 Code	JPN
[Ref.: #9840]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9840]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19491]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces celluloflavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4126	D44011	121	GenBank ENA	58344 tax ID	*
[Ref.: #20218]	Streptomyces celluloflavus 16S-23S ribosomal RNA gene spacer, partial sequence	U93345	299	GenBank ENA	58344 tax ID	*
[Ref.: #20218]	Streptomyces celluloflavus strain KCTC 9702 16S ribosomal RNA gene, partial sequence	AY999829	1423	GenBank ENA	58344 tax ID	*
[Ref.: #20218]	Streptomyces celluloflavus gene for 16S rRNA, partial sequence, strain: NBRC 13780	AB184476	1484	GenBank ENA	58344 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces celluloflavus NRRL B-2493	GCA_000720995	contig	GenBank ENA	58344 tax ID

[Ref.: #67770]

GC-content

71.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces celluloflavus NRRL B-2493 NCBI: GCA_000720995.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.765	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.218	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.626	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	83.737	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.088	no

Availability in culture collections External links

[Ref.: #9840]

Culture collection no.

DSM 40839, ATCC 29806, CECT 7364, ETH 24125, IFO 13780, KCC S-0126, NBRC 13780, NIHJ 198, NRRL B-2493, JCM 4126, CECT 3242, CGMCC 4.1659, KCTC 9702, NBRC 100597, RIA 779, VKM Ac-1819, VTT E-86258

[Ref.: #84180]

SI-ID 39731

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces araujoniae sp. nov.: an actinomycete isolated from a potato tubercle.	da Silva LJ, Taketani RG, de Melo IS, Goodfellow M, Zucchi TD	Antonie Van Leeuwenhoek	10.1007/s10482-013-9901-9	2013	*

References

#9840

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40839

#19491

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84180

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39731.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces celluloflavus NRRL B-2493

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