Name: Shewanella sp. CCUG 39357
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 150238

Type strain:

Species: Shewanella sp.

Culture col. no.: CCUG 39357, NCTC CL 256/73, LMG 2266, JCM 20962, IAM 13617, NCTC 12093

Strain history: IAM 13617 <-- NCTC 12093 (R. J. Owen CL 256/73) <-- B. Holmes 6.

NCBI tax ID(s): 50422 (species)

SI-ID 4967

LMG 2266, IAM 13617, CCUG 39357, NCTC 12093, JCM 20962

Special Collections

CCUG
JCM

Other strains from Shewanella sp.

Section

Shewanella sp. CCUG 39357 is a Gram-negative bacterium that was isolated from Human cerebrospinal fluid.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Full Scientific Name (LPSN)	Shewanella MacDonell and Colwell 1986

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.676
[Ref.: #69481]	Ability of spore formation	no Confidence in %95

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #54762]	Sample type/isolated from	Human cerebrospinal fluid

[Ref.: #67770]	Sample type/isolated from	Cerebro-spinal fluid
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Cerebrospinal fluid
#Infection	#Patient	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella putrefaciens NCTC12093	GCA_900636665	complete	GenBank ENA	24 tax ID	*
[Ref.: #66792]	Shewanella putrefaciens strain NCTC12093	24.16	complete	PATRIC	24 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella putrefaciens NCTC12093 NCBI: GCA_900636665.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	95	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella putrefaciens NCTC12093 NCBI: GCA_900636665.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.489	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	53.205	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.676	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	89.673	no

Availability in culture collections External links

[Ref.: #54762]

Culture collection no.

CCUG 39357, NCTC CL 256/73, LMG 2266, JCM 20962, IAM 13617, NCTC 12093

[Ref.: #104520]

SI-ID 4967

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#54762 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39357

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#104520

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4967.1 )

* These data were automatically processed and therefore are not curated

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Shewanella putrefaciens NCTC12093

Shewanella putrefaciens NCTC12093

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