Name: Shewanella sp. CCUG 39357
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 150238

Type strain:

Species: Shewanella sp.

Culture col. no.: CCUG 39357, NCTC CL 256/73, LMG 2266, JCM 20962, IAM 13617, NCTC 12093

Strain history: IAM 13617 <-- NCTC 12093 (R. J. Owen CL 256/73) <-- B. Holmes 6.

NCBI tax ID(s): 50422 (species)

SI-ID 4967

LMG 2266, IAM 13617, CCUG 39357, NCTC 12093, JCM 20962

Other strains from Shewanella sp.

S. sp. F10, fav-2-50-10, DSM 21323
S. sp. 4033, DSM 12308
S. sp. P2E35, DSM 24433
S. sp. KJW23, DSM 23485
S. sp. JCM 14208
S. sp. JCM 17276
S. sp. JCM 19057
S. sp. 10N.286.54.B5, DSM 113851
S. sp. 10N.286.51.B7, DSM 113865
S. sp. 10N.286.48.B5, DSM 113869
S. sp. 10N.286.52.C2, DSM 113890

Section

Shewanella sp. CCUG 39357 is a mesophilic, motile bacterium that was isolated from Human cerebrospinal fluid.

motile
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Full Scientific Name (LPSN)	Shewanella MacDonell and Colwell 1986

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #69480]	Motility	yes Confidence in %98.088

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.893
[Ref.: #69481]	Ability of spore formation	no Confidence in %95

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #54762]	Sample type/isolated from	Human cerebrospinal fluid

[Ref.: #67770]	Sample type/isolated from	Cerebro-spinal fluid
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Cerebrospinal fluid
#Infection	#Patient	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella putrefaciens NCTC12093	GCA_900636665	complete	GenBank	24 tax ID	*
[Ref.: #66792]	Shewanella putrefaciens strain NCTC12093	24.16	complete	PATRIC	24 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella putrefaciens NCTC12093 NCBI: GCA_900636665.1
[Ref.: #69481]	spore-forming	no	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella putrefaciens NCTC12093 NCBI: GCA_900636665.1
[Ref.: #69480]	flagellated	yes	89.066	no
[Ref.: #69480]	gram-positive	no	98.915	no
[Ref.: #69480]	anaerobic	no	94.305	no
[Ref.: #69480]	aerobic	yes	56.105	no
[Ref.: #69480]	halophile	no	66.341	no
[Ref.: #69480]	spore-forming	no	95.162	no
[Ref.: #69480]	thermophile	no	99.731	yes
[Ref.: #69480]	glucose-util	yes	92.18	no
[Ref.: #69480]	motile	yes	92.567	no
[Ref.: #69480]	glucose-ferment	no	67.21	no

Availability in culture collections External links

[Ref.: #54762]

Culture collection no.

CCUG 39357, NCTC CL 256/73, LMG 2266, JCM 20962, IAM 13617, NCTC 12093

[Ref.: #104520]

SI-ID 4967

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#54762 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39357

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#104520

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4967.1 )

* These data were automatically processed and therefore are not curated

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Shewanella putrefaciens NCTC12093

Shewanella putrefaciens NCTC12093

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