Strain identifier
BacDive ID: 150238
Type strain: 
Species: Shewanella sp.
Strain history: IAM 13617 <-- NCTC 12093 (R. J. Owen CL 256/73) <-- B. Holmes 6.
NCBI tax ID(s): 50422 (species)
version 9.1 (current version)
General
@ref: 54762
BacDive-ID: 150238
keywords: genome sequence, Bacteria, Gram-negative
description: Shewanella sp. CCUG 39357 is a Gram-negative bacterium that was isolated from Human cerebrospinal fluid.
NCBI tax id
- NCBI tax id: 50422
- Matching level: species
strain history
- @ref: 67770
- history: IAM 13617 <-- NCTC 12093 (R. J. Owen CL 256/73) <-- B. Holmes 6.
doi: 10.13145/bacdive150238.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella sp.
- full scientific name: Shewanella MacDonell and Colwell 1986
@ref: 54762
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 90.676 |
| 69481 | no | 95 |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 54762 | Human cerebrospinal fluid |
| 67770 | Cerebro-spinal fluid |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Cerebrospinal fluid |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Shewanella putrefaciens NCTC12093 | GCA_900636665 | complete | ncbi | 24 |
| 66792 | Shewanella putrefaciens strain NCTC12093 | 24.16 | complete | patric | 24 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 95 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.489 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 53.205 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.676 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 89.673 | no |
External links
@ref: 54762
culture collection no.: CCUG 39357, NCTC CL 256/73, LMG 2266, JCM 20962, IAM 13617, NCTC 12093
straininfo link
- @ref: 104520
- straininfo: 4967
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 54762 | Curators of the CCUG | https://www.ccug.se/strain?id=39357 | Culture Collection University of Gothenburg (CCUG) (CCUG 39357) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 104520 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID4967.1 |