Name: Streptomyces aureocirculatus 40386
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15014

Type strain:

Species: Streptomyces aureocirculatus

Strain Designation: 40386

Culture col. no.: DSM 40386, ATCC 15851, ATCC 19823, ATCC 25430, CBS 928.69, IFO 13018, INMI 735, ISP 5386, NBRC 13018, RIA 1210, RIA 682, JCM 4454, BCRC 16227, CGMCC 4.1609, NRRL B-3324, NRRL ISP-5386, VKM Ac-1826

Strain history: KCC S-0454 <-- IFO 13018 <-- SAJ <-- ISP 5386 <-- RIA 682 <-- INMI 735.

NCBI tax ID(s): 67275 (species)

SI-ID 37109

ATCC 19823, ATCC 15851, ATCC 25430, IFO 13018, DSM 40386, JCM 4454, NRRL B-3324, VKM Ac-1826, CBS 928.69, AS 4.1609, NBRC 13018, BCRC 16227, CCRC 16227, CGMCC 4.1609

Special Collections

Section

Streptomyces aureocirculatus 40386 is a spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from Soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces aureocirculatus**
	Full Scientific Name (LPSN)	Streptomyces aureocirculatus (Krassilnikov and Yuan 1965) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces aureocirculatus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.444

[Ref.: #69480]	Motility	no Confidence in %90

[Ref.: #69262]	Colony color	Beige (1001), nut brown (8011)
[Ref.: #69262]	Cultivation medium used	ISP 7

[Ref.: #69262]	Colony color	Beige (1001), brown beige (1011)
[Ref.: #69262]	Cultivation medium used	ISP 4

[Ref.: #69262]	Colony color	Beige (1001), brown beige (1011)
[Ref.: #69262]	Cultivation medium used	ISP 5

[Ref.: #69262]	Colony color	Beige (1001), brown beige (1011)
[Ref.: #69262]	Cultivation medium used	suter without tyrosine

[Ref.: #69262]	Colony color	Ivory (1014), beige (1001)
[Ref.: #69262]	Cultivation medium used	ISP 3

[Ref.: #69262]	Colony color	Nut brown (8011), brown beige (1011)
[Ref.: #69262]	Cultivation medium used	suter with tyrosine

[Ref.: #69262]	Colony color	Ochre yellow (1024), ivory (1014)
[Ref.: #69262]	Cultivation medium used	ISP 6

[Ref.: #69262]	Colony color	Sand yellow (1002), beige (1001)
[Ref.: #69262]	Cultivation medium used	ISP 2

[Ref.: #69262]	Pigment production	yes
[Ref.: #69262]	Pigment name	Melanin
[Ref.: #69262]	Pigment production	yes
[Ref.: #69262]	Pigmentation color	Ivory (1014), brown beige (1011)
[Ref.: #69262]	Pigment name	soluble pigment

[Ref.: #69262]	Multicellular complex forming ability	no
[Ref.: #69262]	Multicellular complex name	Aerial mycelium
[Ref.: #69262]	Medium Name (multicellularity)	ISP 2

[Ref.: #69262]	Multicellular complex forming ability	no
[Ref.: #69262]	Multicellular complex name	Aerial mycelium
[Ref.: #69262]	Medium Name (multicellularity)	ISP 3

[Ref.: #69262]	Multicellular complex forming ability	yes
[Ref.: #69262]	Multicellular complex name	Aerial mycelium
[Ref.: #69262]	Medium Name (multicellularity)	ISP 4

[Ref.: #69262]	Multicellular complex forming ability	yes
[Ref.: #69262]	Multicellular complex name	Aerial mycelium
[Ref.: #69262]	Multicellular complex color	Light ivory (1015)
[Ref.: #69262]	Medium Name (multicellularity)	ISP 5

[Ref.: #69262]	Multicellular complex forming ability	no
[Ref.: #69262]	Multicellular complex name	Aerial mycelium
[Ref.: #69262]	Medium Name (multicellularity)	ISP 6

[Ref.: #69262]	Multicellular complex forming ability	no
[Ref.: #69262]	Multicellular complex name	Aerial mycelium
[Ref.: #69262]	Medium Name (multicellularity)	ISP 7

[Ref.: #69262]	Multicellular complex forming ability	yes
[Ref.: #69262]	Multicellular complex name	Aerial mycelium
[Ref.: #69262]	Multicellular complex color	Signal grey (7004)
[Ref.: #69262]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69262]	Multicellular complex forming ability	yes
[Ref.: #69262]	Multicellular complex name	Aerial mycelium
[Ref.: #69262]	Multicellular complex color	Oyster white (1013)
[Ref.: #69262]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69262]

Caption:

(SSM+T, SSM-T)

[Ref.: #69262]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69262]

Caption:

(SSM+T, SSM-T)

[Ref.: #69262]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9514]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9514]

Culture medium growth

[Ref.: #9514]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9514]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9514]	growth	28 °C
[Ref.: #19448]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.93

[Ref.: #69480]

Ability of spore formation

yes Confidence in %92.505

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69262]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69262]	arabinose ChEBI	+/-	growth
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #69262]	cellulose ChEBI	-	growth
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69262]	fructose ChEBI	+	growth
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #69262]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69262]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69262]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #69262]	raffinose ChEBI	-	growth
[Ref.: #69262]	rhamnose ChEBI	+/-	growth
[Ref.: #69262]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69262]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne, API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19448]	309	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69262]	3756	-	-	+	+	-	+	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69262]	5940	not determinedn.d.	+	+	+/-	+	+	+	+	+	+	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9514]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19448]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #69262]	Streptomyces aureocirculatus strain DSM 40386T 16S ribosomal RNA gene, partial sequence	KF772674		GenBank ENA
[Ref.: #20218]	Streptomyces aureocirculatus strain IFO 13018 16S ribosomal RNA gene, partial sequence	AY999861	1421	GenBank ENA	67275 tax ID	*
[Ref.: #20218]	Streptomyces aureocirculatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4454	D44151	120	GenBank ENA	67275 tax ID	*
[Ref.: #20218]	Streptomyces aureocirculatus gene for 16S rRNA, partial sequence, strain: NBRC 13018	AB184260	1479	GenBank ENA	67275 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces aureocirculatus NRRL ISP-5386	GCA_000720475	contig	GenBank ENA	67275 tax ID

[Ref.: #67770]

GC-content

71.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces aureocirculatus NRRL ISP-5386 NCBI: GCA_000720475.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.444	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.833	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.93	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.505	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #9514]

Culture collection no.

DSM 40386, ATCC 15851, ATCC 19823, ATCC 25430, CBS 928.69, IFO 13018, INMI 735, ISP 5386, NBRC 13018, RIA 1210, RIA 682, JCM 4454, BCRC 16227, CGMCC 4.1609, NRRL B-3324, NRRL ISP-5386, VKM Ac-1826

[Ref.: #84121]

SI-ID 37109

References

#9514

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40386

#19448

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69262

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84121

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37109.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces aureocirculatus NRRL ISP-5386

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