Strain identifier

BacDive ID: 15014

Type strain: Yes

Species: Streptomyces aureocirculatus

Strain Designation: 40386

Strain history: KCC S-0454 <-- IFO 13018 <-- SAJ <-- ISP 5386 <-- RIA 682 <-- INMI 735.

NCBI tax ID(s): 67275 (species)

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General

@ref: 9514

BacDive-ID: 15014

DSM-Number: 40386

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces aureocirculatus 40386 is a mesophilic bacterium that builds an aerial mycelium and was isolated from Soil.

NCBI tax id

  • NCBI tax id: 67275
  • Matching level: species

strain history

@refhistory
9514<- E.B. Shirling, ISP <- V.D. Kuznetsov, INMI
67770KCC S-0454 <-- IFO 13018 <-- SAJ <-- ISP 5386 <-- RIA 682 <-- INMI 735.

doi: 10.13145/bacdive15014.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces aureocirculatus
  • full scientific name: Streptomyces aureocirculatus (Krassilnikov and Yuan 1965) Pridham 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces aureocirculatus

@ref: 9514

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces aureocirculatus

full scientific name: Streptomyces aureocirculatus (Krasil'nikov and Yuan 1965) Pridham 1970 emend. Nouioui et al. 2018

strain designation: 40386

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69262Beige (1001), nut brown (8011)ISP 7
69262Beige (1001), brown beige (1011)ISP 4
69262Beige (1001), brown beige (1011)ISP 5
69262Beige (1001), brown beige (1011)suter without tyrosine
69262Ivory (1014), beige (1001)ISP 3
69262Nut brown (8011), brown beige (1011)suter with tyrosine
69262Ochre yellow (1024), ivory (1014)ISP 6
69262Sand yellow (1002), beige (1001)ISP 2

multicellular morphology

@refforms multicellular complexcomplex namemedium namecomplex color
69262noAerial myceliumISP 2
69262noAerial myceliumISP 3
69262yesAerial myceliumISP 4
69262yesAerial myceliumISP 5Light ivory (1015)
69262noAerial myceliumISP 6
69262noAerial myceliumISP 7
69262yesAerial myceliumsuter with tyrosineSignal grey (7004)
69262yesAerial myceliumsuter without tyrosineOyster white (1013)

pigmentation

@refproductionnamecolor
69262yesMelanin
69262yessoluble pigmentIvory (1014), brown beige (1011)

multimedia

@refmultimedia contentcaptionintellectual property rights
69262DSM_40386_image7.jpeg(SSM+T, SSM-T)Helmholtz-Zentrum für Infektionsforschung GmbH
69262DSM_40386_image8.jpeg(SSM+T, SSM-T)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 9514
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19448positiveoptimum28mesophilic
9514positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

halophily

  • @ref: 69262
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6926222599arabinose+/-growth
6926262968cellulose-growth
6926228757fructose+growth
6926217234glucose+growth
6926217268inositol+growth
6926237684mannose+growth
6926216634raffinose-growth
6926226546rhamnose+/-growth
6926217992sucrose-growth
6926218222xylose+/-growth
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69262--++-++---+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69262+++/-++++++++-+-++++-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19448+++++-+--++

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil
  • country: Russia
  • origin.country: RUS

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
95141Risk group (German classification)
194481Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces aureocirculatus strain IFO 13018 16S ribosomal RNA gene, partial sequenceAY9998611421ena67275
20218Streptomyces aureocirculatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4454D44151120ena67275
20218Streptomyces aureocirculatus gene for 16S rRNA, partial sequence, strain: NBRC 13018AB1842601479ena67275
69262Streptomyces aureocirculatus strain DSM 40386T 16S ribosomal RNA gene, partial sequenceKF772674ena

Genome sequences

  • @ref: 67770
  • description: Streptomyces aureocirculatus NRRL ISP-5386
  • accession: GCA_000720475
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 67275

GC content

  • @ref: 67770
  • GC-content: 71.2
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.019no
flagellatedno98.105no
gram-positiveyes90.952no
anaerobicno99.316no
halophileno90.365no
spore-formingyes95.056no
thermophileno98.928yes
glucose-utilyes89.114yes
aerobicyes90.853no
glucose-fermentno87.797yes

External links

@ref: 9514

culture collection no.: DSM 40386, ATCC 15851, ATCC 19823, ATCC 25430, CBS 928.69, IFO 13018, INMI 735, ISP 5386, NBRC 13018, RIA 1210, RIA 682, JCM 4454, BCRC 16227, CGMCC 4.1609, NRRL B-3324, NRRL ISP-5386, VKM Ac-1826

straininfo link

  • @ref: 84121
  • straininfo: 37109

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9514Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40386)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40386
19448Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40386.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69262Wink, J.https://cdn.dsmz.de/wink/DSM%2040386.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
84121Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37109.1StrainInfo: A central database for resolving microbial strain identifiers