Name: Caldalkalibacillus uzonensis JW/WZ-YB58
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1498

Type strain:

Species: Caldalkalibacillus uzonensis

Strain Designation: JW/WZ-YB58

Culture col. no.: DSM 17740, ATCC BAA-1258

Strain history: <- J. Wiegel <- Weidong Zhao; JW/WZ-YB58

NCBI tax ID(s): 353224 (species)

SI-ID 298285

ATCC BAA-1258, DSM 17740

Section

Caldalkalibacillus uzonensis JW/WZ-YB58 is an aerobe, spore-forming, thermophilic bacterium that was isolated from edges of the hot spring Zarvarzin II.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Caldalkalibacillus*
	Species	**Caldalkalibacillus uzonensis**
	Full Scientific Name (LPSN)	Caldalkalibacillus uzonensis Zhao et al. 2008

Synonym

"Thermalkalibacillus uzonensis"

Information on morphological and physiological properties Morphology

[Ref.: #32349]	Gram stain	positive

[Ref.: #32349]	Cell length	8.75 µm

[Ref.: #32349]	Cell width	0.75 µm

[Ref.: #32349]	Cell shape	rod-shaped

[Ref.: #32349]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7163]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7163]

Culture medium growth

[Ref.: #7163]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7163]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7163]	growth	50 °C
[Ref.: #32349]	growth	42-64 °C
[Ref.: #32349]	optimum	51 °C

[Ref.: #7163]	Temperature range	thermophilic
[Ref.: #32349]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #32349]			optimum	8.3
[Ref.: #32349]			growth	6.4-9.7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32349]

Oxygen tolerance

aerobe

[Ref.: #32349]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32349]		NaCl		growth	0-6	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32349]	arabinose ChEBI	+	carbon source
[Ref.: #32349]	fructose ChEBI	+	carbon source
[Ref.: #32349]	lactose ChEBI	+	carbon source
[Ref.: #32349]	sucrose ChEBI	+	carbon source
[Ref.: #32349]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32349]		cytochrome oxidase	+	1.9.3.1
[Ref.: #32349]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7163]	Sample type/isolated from	edges of the hot spring Zarvarzin II
[Ref.: #7163]	Geographic location (country and/or sea, region)	East Thermal Field of the Uzon Caldera, Kamchatka
[Ref.: #7163]	Country	Russia
[Ref.: #7163]	Country ISO 3 Code	RUS
[Ref.: #7163]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ221694 (>99% sequence identity) for Caldalkalibacillus uzonensis subclade from Microbeatlas

Aquatic Samples	110
Soil Samples	168
Animal Samples	71
Plant Samples	171
Total Samples	520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7163]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7163]	Caldalkalibacillus uzonensis strain JW/WZ-YB58 16S ribosomal RNA gene, partial sequence	DQ221694	1436	ENA	353224 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldalkalibacillus uzonensis DSM 17740	2926604688	draft	JGI IMG/M	353224 tax ID	*

[Ref.: #7163]

GC-content

45 mol%

Availability in culture collections External links

[Ref.: #7163]

Culture collection no.

DSM 17740, ATCC BAA-1258

[Ref.: #71144]

SI-ID 298285

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Caldalkalibacillus uzonensis sp. nov. and emended description of the genus Caldalkalibacillus.	Zhao W, Zhang CL, Romanek CS, Wiegel J	Int J Syst Evol Microbiol	10.1099/ijs.0.65363-0	2008	*
Phylogeny	Thermalkalibacillus uzonensis gen. nov. sp. nov, a novel aerobic alkali-tolerant thermophilic bacterium isolated from a hot spring in Uzon Caldera, Kamchatka.	Zhao W, Weber C, Zhang CL, Romanek CS, King GM, Mills G, Sokolova T, Wiegel J	Extremophiles	10.1007/s00792-006-0511-6	2006	*

References

#7163

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17740

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32349

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28580 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71144

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298285.1 )

#28580

IJSEM 1106 2008 ( DOI 10.1099/ijs.0.65363-0 , PubMed 18450697 )

* These data were automatically processed and therefore are not curated

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