Name: Jeotgalibacillus marinus 581
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1499

Type strain:

Species: Jeotgalibacillus marinus

Strain Designation: 581

Culture col. no.: DSM 1297, ATCC 29841, CCUG 28884, CIP 103308, LMG 6930, NRRL B-14558, NCIMB 2140

Strain history: CIP <- 1989, DSM <- H.J. Rüger: strain 581, Bacillus psychrophilus subsp. marinus

NCBI tax ID(s): 86667 (species)

SI-ID 1153

LMG 6930, ATCC 29841, DSM 1297, NCMB 2140, CCUG 28884, NRRL B-14558, CIP 103308, NCIMB 2140, CECT 4272, KCTC 3448, NRRL B-14321, BCRC 15916, CCRC 15916, BCRC 16021, CCRC 16021, KCTC 3868

Special Collections

Other strains from Jeotgalibacillus marinus

Section

Jeotgalibacillus marinus 581 is an obligate aerobe, spore-forming, Gram-positive bacterium that was isolated from sediment.

Gram-positive
spore-forming
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Jeotgalibacillus*
	Species	**Jeotgalibacillus marinus**
	Full Scientific Name (LPSN)	Jeotgalibacillus marinus (Rüger and Richter 1979) Yoon et al. 2010

	Synonym	Bacillus globisporus subsp. marinus
	Synonym	Marinibacillus marinus
	Synonym	Bacillus marinus

Information on morphological and physiological properties Morphology

[Ref.: #120815]	Gram stain	positive

[Ref.: #120815]	Cell shape	rod-shaped

[Ref.: #120815]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34033]

Culture medium

Marine agar (MA)

[Ref.: #34033]

Culture medium growth

[Ref.: #34033]

Culture medium composition

expand / minimize

[Ref.: #628]

Culture medium

MARINE AGAR (DSMZ Medium 123)

[Ref.: #628]

Culture medium growth

[Ref.: #628]

Culture medium link

Medium recipe at MediaDive

[Ref.: #628]

Culture medium composition

expand / minimize

[Ref.: #120815]

Culture medium

CIP Medium 13

[Ref.: #120815]

Culture medium growth

[Ref.: #120815]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #628]		growth	20 °C
[Ref.: #34033]		growth	22 °C
[Ref.: #120815]		growth	10-30 °C
[Ref.: #120815]	no	growth	37 °C
[Ref.: #120815]	no	growth	45 °C
[Ref.: #120815]	no	growth	55 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120815]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]	Ability of spore formation	yes Confidence in %95.228
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #120815]	NaCl		growth	2	%
[Ref.: #120815]	NaCl	no	growth	0	%
[Ref.: #120815]	NaCl	no	growth	4	%
[Ref.: #120815]	NaCl	no	growth	6	%
[Ref.: #120815]	NaCl	no	growth	8	%
[Ref.: #120815]	NaCl	no	growth	10	%

[Ref.: #628]	Murein short key	A11. gly
[Ref.: #628]	Murein types	A1alpha L-Lys-direct; alpha-carboxyl group of D-Glu substituted by glycine

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120815]	hippurate ChEBI	-	hydrolysis
[Ref.: #120815]	nitrate ChEBI	-	reduction
[Ref.: #120815]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120815]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120815]		acetoin ChEBI	-
[Ref.: #120815]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120815]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120815]	amylase	-
[Ref.: #120815]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120815]	caseinase	+	3.4.21.50
[Ref.: #120815]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120815]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #120815]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120815]	gelatinase	+/-
[Ref.: #120815]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120815]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120815]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120815]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120815]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120815]	tween esterase	-
[Ref.: #120815]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120815]	389	not determinedn.d.	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120815]	7490	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #628]	Sample type/isolated from	sediment
[Ref.: #628]	Geographic location (country and/or sea, region)	North East Atlantic, Josephine Bank

[Ref.: #49442]	Sample type/isolated from	Sediment
[Ref.: #49442]	Geographic location (country and/or sea, region)	Northeast Atlantic,Josephine Bank
[Ref.: #49442]	Country	Atlantic Ocean

[Ref.: #120815]	Sample type/isolated from	Environment, Marine sediment, 237 m depth
[Ref.: #120815]	Geographic location (country and/or sea, region)	Josephine bank , North
[Ref.: #120815]	Country	Atlantic Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB021190 (>99% sequence identity) for Jeotgalibacillus from Microbeatlas

Aquatic Samples	244
Soil Samples	275
Animal Samples	167
Plant Samples	33
Total Samples	719

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #628]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120815]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #628]	Bacillus marinus 16S rRNA gene, strain DSM 1297	AJ237708	1523	GenBank ENA	86667 tax ID
[Ref.: #20218]	Bacillus marinus gene for 16S ribosomal RNA	AB021190	1514	GenBank ENA	86667 tax ID	*
[Ref.: #20218]	Marinibacillus marinus clone GO-1_f 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478075	744	GenBank ENA	86667 tax ID	*
[Ref.: #20218]	Marinibacillus marinus isolate Mm10 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723661	604	GenBank ENA	86667 tax ID	*
[Ref.: #20218]	Marinibacillus marinus isolate Mm21 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723662	507	GenBank ENA	86667 tax ID	*
[Ref.: #20218]	Marinibacillus marinus isolate Mm56 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723663	858	GenBank ENA	86667 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Jeotgalibacillus marinus strain DSM 1297	86667.3	wgs	PATRIC	86667 tax ID	*
[Ref.: #66792]	Jeotgalibacillus marinus DSM 1297	2651869825	draft	JGI IMG/M	86667 tax ID	*

[Ref.: #628]

GC-content

39.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Jeotgalibacillus marinus strain DSM 1297 PATRIC: 86667.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jeotgalibacillus marinus strain DSM 1297 PATRIC: 86667.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	83.396	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.459	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	72.827	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	95.228	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.43	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	89.305	no

Availability in culture collections External links

[Ref.: #628]

Culture collection no.

DSM 1297, ATCC 29841, CCUG 28884, CIP 103308, LMG 6930, NRRL B-14558, NCIMB 2140

[Ref.: #71145]

SI-ID 1153

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalibacillus proteolyticus sp. nov., a protease-producing bacterium isolated from ocean sediments.	Li Y, Zhang Z, Xu Z, Fang D, Wang ET, Shao S, Du Z, Liu W, Xie Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.003060	2018	*
Phylogeny	Jeotgalibacillus soli sp. nov., a Gram-stain-positive bacterium isolated from soil.	Cunha S, Tiago I, Paiva G, Nobre F, da Costa MS, Verissimo A	Int J Syst Evol Microbiol	10.1099/ijs.0.028878-0	2011	*
Phylogeny	Jeotgalibacillus salarius sp. nov., isolated from a marine saltern, and reclassification of Marinibacillus marinus and Marinibacillus campisalis as Jeotgalibacillus marinus comb. nov. and Jeotgalibacillus campisalis comb. nov., respectively.	Yoon JH, Kang SJ, Schumann P, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.008318-0	2009	*
Phylogeny	Marinibacillus campisalis sp. nov., a moderate halophile isolated from a marine solar saltern in Korea, with emended description of the genus Marinibacillus.	Yoon JH, Kim IG, Schumann P, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02779-0	2004	*
Phylogeny	Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Ruger 1983 . as mMrinibacillus marinus gen nov., comb. nov.	Yoon JH, Weiss N, Lee KC, Lee IS, Kang KH, Park YH	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2087	2001	*

References

#628	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1297

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34033 ; Curators of the CIP;
#49442 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28884

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71145

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1153.1 )

#120815 Collection of Institut Pasteur ; Curators of the CIP; CIP 103308
* These data were automatically processed and therefore are not curated

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Jeotgalibacillus marinus strain DSM 1297

Jeotgalibacillus marinus strain DSM 1297

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