Strain identifier
BacDive ID: 1498
Type strain: 
Species: Caldalkalibacillus uzonensis
Strain Designation: JW/WZ-YB58
Strain history: <- J. Wiegel <- Weidong Zhao; JW/WZ-YB58
NCBI tax ID(s): 353224 (species)
version 8.1 (current version)
General
@ref: 7163
BacDive-ID: 1498
DSM-Number: 17740
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, thermophilic, Gram-positive, motile, rod-shaped
description: Caldalkalibacillus uzonensis JW/WZ-YB58 is an aerobe, spore-forming, thermophilic bacterium that was isolated from edges of the hot spring Zarvarzin II.
NCBI tax id
- NCBI tax id: 353224
- Matching level: species
strain history
- @ref: 7163
- history: <- J. Wiegel <- Weidong Zhao; JW/WZ-YB58
doi: 10.13145/bacdive1498.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Caldalkalibacillus
- species: Caldalkalibacillus uzonensis
- full scientific name: Caldalkalibacillus uzonensis Zhao et al. 2008
synonyms
- @ref: 20215
- synonym: Thermalkalibacillus uzonensis
@ref: 7163
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Caldalkalibacillus
species: Caldalkalibacillus uzonensis
full scientific name: Caldalkalibacillus uzonensis Zhao et al. 2008
strain designation: JW/WZ-YB58
type strain: yes
Morphology
cell morphology
- @ref: 32349
- gram stain: positive
- cell length: 8.75 µm
- cell width: 0.75 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 7163
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7163 | positive | growth | 50 | thermophilic |
| 32349 | positive | growth | 42-64 | thermophilic |
| 32349 | positive | optimum | 51 | thermophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32349 | positive | growth | 6.4-9.7 | alkaliphile |
| 32349 | positive | optimum | 8.3 |
Physiology and metabolism
oxygen tolerance
- @ref: 32349
- oxygen tolerance: aerobe
spore formation
- @ref: 32349
- spore formation: yes
halophily
- @ref: 32349
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-6 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32349 | 22599 | arabinose | + | carbon source |
| 32349 | 28757 | fructose | + | carbon source |
| 32349 | 17716 | lactose | + | carbon source |
| 32349 | 17992 | sucrose | + | carbon source |
| 32349 | 27082 | trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32349 | gelatinase | + | |
| 32349 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 7163
- sample type: edges of the hot spring Zarvarzin II
- geographic location: East Thermal Field of the Uzon Caldera, Kamchatka
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_56927.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_503;96_2502;97_31700;98_40601;99_56927&stattab=map
- Last taxonomy: Caldalkalibacillus uzonensis subclade
- 16S sequence: DQ221694
- Sequence Identity:
- Total samples: 520
- soil counts: 168
- aquatic counts: 110
- animal counts: 71
- plant counts: 171
Safety information
risk assessment
- @ref: 7163
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7163
- description: Caldalkalibacillus uzonensis strain JW/WZ-YB58 16S ribosomal RNA gene, partial sequence
- accession: DQ221694
- length: 1436
- database: ena
- NCBI tax ID: 353224
Genome sequences
- @ref: 66792
- description: Caldalkalibacillus uzonensis DSM 17740
- accession: 2926604688
- assembly level: draft
- database: img
- NCBI tax ID: 353224
GC content
- @ref: 7163
- GC-content: 45
External links
@ref: 7163
culture collection no.: DSM 17740, ATCC BAA 1258
straininfo link
- @ref: 71144
- straininfo: 298285
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16565784 | Thermalkalibacillus uzonensis gen. nov. sp. nov, a novel aerobic alkali-tolerant thermophilic bacterium isolated from a hot spring in Uzon Caldera, Kamchatka. | Zhao W, Weber C, Zhang CL, Romanek CS, King GM, Mills G, Sokolova T, Wiegel J | Extremophiles | 10.1007/s00792-006-0511-6 | 2006 | Bacteria, Aerobic/*classification/genetics/*isolation & purification, Hot Springs/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Water Microbiology | Enzymology |
| Phylogeny | 18450697 | Description of Caldalkalibacillus uzonensis sp. nov. and emended description of the genus Caldalkalibacillus. | Zhao W, Zhang CL, Romanek CS, Wiegel J | Int J Syst Evol Microbiol | 10.1099/ijs.0.65363-0 | 2008 | Bacterial Typing Techniques, Base Composition, Catalase/metabolism, DNA, Bacterial/analysis/isolation & purification, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Bacteria/*classification/genetics/isolation & purification/physiology, Hot Springs/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Species Specificity, Spores, Bacterial/physiology | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7163 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17740) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17740 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32349 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28580 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71144 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID298285.1 | StrainInfo: A central database for resolving microbial strain identifiers |