Name: Streptomyces ambofaciens DSM 40053
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14974

Type strain:

Species: Streptomyces ambofaciens

Culture col. no.: DSM 40053, ATCC 23877, CBS 616.68, IFO 12836, ISP 5053, JCM 4204, NBRC 12836, RIA 1115, BCRC 11857, CECT 3101, CGMCC 4.1528, JCM 4618, KCTC 9111, NBIMCC 1863, NRRL B-2516

Strain history: KCC S-0204 <-- J. Nüesch.

NCBI tax ID(s): 278992 (strain), 1889 (species)

SI-ID 389373

ATCC 23877, IFO 12836, DSM 40053, JCM 4204, CCRC 11857, JCM 4618, NRRL B-2516, AS 4.1528, CECT 3101, KCTC 9111, NBRC 12836, NBRC 12651, BCRC 11857, BCC 7029, KACC 20005, NBIMCC 1863, CGMCC 4.1528, CBS 616.68

Other strains from Streptomyces ambofaciens

S. ambofaciens pSAM2, B2, B-2420, DSM 10282, ATCC ...
S. ambofaciens pSAM2, JI3212 (B3), DSM 10283
S. ambofaciens Tü 13, DSM 40697, NRRL 2531, ETH ...
S. ambofaciens ST004999(HKI), JA10075, IMET 40226

Section

Streptomyces ambofaciens DSM 40053 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces ambofaciens**
	Full Scientific Name (LPSN)	Streptomyces ambofaciens Pinnert-Sindico 1954 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #9237]

Caption:

Medium 65 28°C

[Ref.: #9237]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9237]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9237]

Culture medium growth

[Ref.: #9237]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9237]

Culture medium composition

expand / minimize

[Ref.: #9237]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9237]

Culture medium growth

[Ref.: #9237]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9237]	growth	28 °C
[Ref.: #18474]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9237]	Temperature range	mesophilic
[Ref.: #18474]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9237]	Name of produced compound	spiramycin I
[Ref.: #9237]	Name of produced compound	spiramycin II
[Ref.: #9237]	Name of produced compound	spiramycin III
[Ref.: #9237]	Name of produced compound	spiramycin netropsin
[Ref.: #9237]	Name of produced compound	congocidin
[Ref.: #9237]	Name of produced compound	netropsin
[Ref.: #9237]	Name of produced compound	spiramycin I, II, III

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18474]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18474]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18474]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18474]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18474]	mannitol ChEBI	+
[Ref.: #18474]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18474]	raffinose ChEBI	-
[Ref.: #18474]	rhamnose ChEBI	+
[Ref.: #18474]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18474]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	congocidin	yes
[Ref.: #67770]	spiramycin	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18474]	58	+	+	+	+	+	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18474]	177	not determinedn.d.	+	+	+	+	+	+	-	-	-	+	+	-	+	-	+	+	+	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	aminopropanol phosphate biosynthesis	100	2 of 2
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	flavin biosynthesis	93.33	14 of 15
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	metabolism of disaccharids	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	myo-inositol biosynthesis	90	9 of 10
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	87.5	7 of 8
[Ref.: #66794]	alanine metabolism	86.21	25 of 29
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	degradation of sugar acids	80	20 of 25
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	histidine metabolism	79.31	23 of 29
[Ref.: #66794]	non-pathway related	78.95	30 of 38
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	tryptophan metabolism	76.32	29 of 38
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	toluene degradation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	oxidative phosphorylation	73.63	67 of 91
[Ref.: #66794]	isoprenoid biosynthesis	73.08	19 of 26
[Ref.: #66794]	d-xylose degradation	72.73	8 of 11
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	aclacinomycin biosynthesis	71.43	5 of 7
[Ref.: #66794]	polyamine pathway	69.57	16 of 23
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	carotenoid biosynthesis	68.18	15 of 22
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	degradation of pentoses	64.29	18 of 28
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	cholesterol biosynthesis	63.64	7 of 11
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	vitamin B6 metabolism	54.55	6 of 11
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	grixazone biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	chlorophyll metabolism	44.44	8 of 18
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	elloramycin biosynthesis	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9237]	Sample type/isolated from	soil
[Ref.: #9237]	Country	France
[Ref.: #9237]	Country ISO 3 Code	FRA
[Ref.: #9237]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Péronne, Somme
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18474]	Biosafety level	1	German classification
[Ref.: #9237]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9237]	Streptomyces ambofaciens ATCC 23877, complete genome	CP012382	8303940	ENA	278992 tax ID
[Ref.: #20218]	Streptomyces ambofaciens strain DSM40053 16S-23S intergenic spacer region, partial sequence	AF363489	285	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA A intergenic spacer, complete sequence	AY027681	306	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA B intergenic spacer, complete sequence	AY027682	303	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA C intergenic spacer, complete sequence	AY027683	299	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA D intergenic spacer, complete sequence	AY027684	303	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA E intergenic spacer, complete sequence	AY027685	301	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA F intergenic spacer, complete sequence	AY027686	300	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens rrnD gene cluster encoding 16S, 23S and 5S ribosomal RNAs	M27245	6379	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4618	D44269	121	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens gene for 16S rRNA, partial sequence, strain: NBRC 12651	AB184107	1469	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens gene for 16S rRNA, partial sequence, strain: NBRC 12836	AB184182	1464	ENA	1889 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces ambofaciens ATCC 23877	GCA_001267885	complete	GenBank	278992 tax ID	*
[Ref.: #66792]	Streptomyces ambofaciens ATCC 23877	278992.20	plasmid	PATRIC	278992 tax ID	*
[Ref.: #66792]	Streptomyces ambofaciens ATCC 23877	278992.5	complete	PATRIC	278992 tax ID	*
[Ref.: #66792]	Streptomyces ambofaciens ATCC 23877	2873063797	complete	JGI IMG/M	278992 tax ID	*

[Ref.: #67770]

GC-content

72.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces ambofaciens ATCC 23877 ATCC 23877 NCBI: GCA_001267885.1
[Ref.: #69480]	motile	no	94.57	no
[Ref.: #69480]	flagellated	no	97.972	no
[Ref.: #69480]	gram-positive	yes	90.805	no
[Ref.: #69480]	anaerobic	no	99.303	no
[Ref.: #69480]	halophile	no	93.031	no
[Ref.: #69480]	spore-forming	yes	96.768	no
[Ref.: #69480]	thermophile	no	98.718	yes
[Ref.: #69480]	glucose-util	yes	89.665	no
[Ref.: #69480]	aerobic	yes	94.04	no
[Ref.: #69480]	glucose-ferment	no	86.609	no

Availability in culture collections External links

[Ref.: #9237]

Culture collection no.

DSM 40053, ATCC 23877, CBS 616.68, IFO 12836, ISP 5053, JCM 4204, NBRC 12836, RIA 1115, BCRC 11857, CECT 3101, CGMCC 4.1528, JCM 4618, KCTC 9111, NBIMCC 1863, NRRL B-2516

[Ref.: #84084]

SI-ID 389373

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Degradation of carbonyl sulfide by Actinomycetes and detection of clade D of beta-class carbonic anhydrase.	Ogawa T, Kato H, Higashide M, Nishimiya M, Katayama Y	FEMS Microbiol Lett	10.1093/femsle/fnw223	2016	*
Metabolism	Role of secondary metabolites in the interaction between Pseudomonas fluorescens and soil microorganisms under iron-limited conditions.	Deveau A, Gross H, Palin B, Mehnaz S, Schnepf M, Leblond P, Dorrestein PC, Aigle B	FEMS Microbiol Ecol	10.1093/femsec/fiw107	2016	*
Metabolism	Pseudomonas fluorescens pirates both ferrioxamine and ferricoelichelin siderophores from Streptomyces ambofaciens.	Galet J, Deveau A, Hotel L, Frey-Klett P, Leblond P, Aigle B	Appl Environ Microbiol	10.1128/AEM.03520-14	2015	*
Metabolism	Identification and functional analysis of genes controlling biosynthesis of 2-methylisoborneol.	Komatsu M, Tsuda M, Omura S, Oikawa H, Ikeda H	Proc Natl Acad Sci U S A	10.1073/pnas.0802312105	2008	*
Metabolism	Transcriptional Regulation of Congocidine (Netropsin) Biosynthesis and Resistance.	Vingadassalon A, Lorieux F, Juguet M, Noel A, Santos LDF, Marin Fernandez L, Pernodet JL, Bury-Mone S, Lautru S	Appl Environ Microbiol	10.1128/AEM.01380-21	2021	*
Pathogenicity	Stimulatory Effects of Methyl-beta-cyclodextrin on Spiramycin Production and Physical-Chemical Characterization of Nonhost@Guest Complexes.	Calcagnile M, Bettini S, Damiano F, Tala A, Tredici SM, Pagano R, Di Salvo M, Siculella L, Fico D, De Benedetto GE, Valli L, Alifano P	ACS Omega	10.1021/acsomega.7b01766	2018	*
Metabolism	Pirin: A novel redox-sensitive modulator of primary and secondary metabolism in Streptomyces.	Tala A, Damiano F, Gallo G, Pinatel E, Calcagnile M, Testini M, Fico D, Rizzo D, Sutera A, Renzone G, Scaloni A, De Bellis G, Siculella L, De Benedetto GE, Puglia AM, Peano C, Alifano P	Metab Eng	10.1016/j.ymben.2018.06.008	2018	*
Genetics	Complete genome sequence of Streptomyces ambofaciens ATCC 23877, the spiramycin producer.	Thibessard A, Haas D, Gerbaud C, Aigle B, Lautru S, Pernodet JL, Leblond P	J Biotechnol	10.1016/j.jbiotec.2015.09.020	2015	*
Metabolism	A single Sfp-type phosphopantetheinyl transferase plays a major role in the biosynthesis of PKS and NRPS derived metabolites in Streptomyces ambofaciens ATCC23877.	Bunet R, Riclea R, Laureti L, Hotel L, Paris C, Girardet JM, Spiteller D, Dickschat JS, Leblond P, Aigle B	PLoS One	10.1371/journal.pone.0087607	2014	*
Metabolism	Genome mining of Streptomyces ambofaciens.	Aigle B, Lautru S, Spiteller D, Dickschat JS, Challis GL, Leblond P, Pernodet JL	J Ind Microbiol Biotechnol	10.1007/s10295-013-1379-y	2013	*
Pathogenicity	Identification of a bioactive 51-membered macrolide complex by activation of a silent polyketide synthase in Streptomyces ambofaciens.	Laureti L, Song L, Huang S, Corre C, Leblond P, Challis GL, Aigle B	Proc Natl Acad Sci U S A	10.1073/pnas.1019077108	2011	*
Metabolism	Biochemical characterization of a novel indole prenyltransferase from Streptomyces sp. SN-593.	Takahashi S, Takagi H, Toyoda A, Uramoto M, Nogawa T, Ueki M, Sakaki Y, Osada H	J Bacteriol	10.1128/JB.01557-09	2010	*
Metabolism	Multiple biosynthetic and uptake systems mediate siderophore-dependent iron acquisition in Streptomyces coelicolor A3(2) and Streptomyces ambofaciens ATCC 23877.	Barona-Gomez F, Lautru S, Francou FX, Leblond P, Pernodet JL, Challis GL	Microbiology (Reading)	10.1099/mic.0.29161-0	2006	*
Genetics	Evolution of the terminal regions of the Streptomyces linear chromosome.	Choulet F, Aigle B, Gallois A, Mangenot S, Gerbaud C, Truong C, Francou FX, Fourrier C, Guerineau M, Decaris B, Barbe V, Pernodet JL, Leblond P	Mol Biol Evol	10.1093/molbev/msl108	2006	*
Genetics	Intraspecific variability of the terminal inverted repeats of the linear chromosome of Streptomyces ambofaciens.	Choulet F, Gallois A, Aigle B, Mangenot S, Gerbaud C, Truong C, Francou FX, Borges F, Fourrier C, Guerineau M, Decaris B, Barbe V, Pernodet JL, Leblond P	J Bacteriol	10.1128/JB.00734-06	2006	*
Genetics	Genetic instability of whiG gene during the aerial mycelium development of Streptomyces ambofaciens ATCC23877 under different conditions of nitrogen limitations.	Genay M, Catakli S, Kleinclauss A, Andrieux A, Decaris B, Dary A	Mutat Res	10.1016/j.mrfmmm.2005.10.005	2006	*
Metabolism	Sigma factor WhiG and its regulation constitute a target of a mutational phenomenon occurring during aerial mycelium growth in Streptomyces ambofaciens ATCC23877.	Catakli S, Andrieux A, Decaris B, Dary A	Res Microbiol	10.1016/j.resmic.2004.12.001	2005	*
Metabolism	Involvement of AlpV, a new member of the Streptomyces antibiotic regulatory protein family, in regulation of the duplicated type II polyketide synthase alp gene cluster in Streptomyces ambofaciens.	Aigle B, Pang X, Decaris B, Leblond P	J Bacteriol	10.1128/JB.187.7.2491-2500.2005	2005	*
Enzymology	Spontaneous chromosome circularization and amplification of a new amplifiable unit of DNA belonging to the terminal inverted repeats in Streptomyces ambofaciens ATCC 23877.	Catakli S, Andrieux A, Leblond P, Decaris B, Dary A	Arch Microbiol	10.1007/s00203-003-0534-7	2003	*
Genetics	Intraclonal polymorphism in the bacterium Streptomyces ambofaciens ATCC23877: evidence for a high degree of heterogeneity of the wild type clones.	Martin P, Dary A, Andre A, Fischer G, Leblond P, Decaris B	Mutat Res	10.1016/s0027-5107(99)00149-9	1999	*
Phenotype	Generation of a genetic polymorphism in clonal populations of the bacterium Streptomyces ambofaciens: characterization of different mutator states.	Martin P, Dary A, Decaris B	Mutat Res	10.1016/s0027-5107(98)00156-0	1998	*
Pathogenicity	Stimulation of genetic instability in Streptomyces ambofaciens ATCC 23877 by antibiotics that interact with DNA gyrase.	Volff JN, Vandewiele D, Simonet JM, Decaris B	J Gen Microbiol	10.1099/00221287-139-11-2551	1993	*
Pathogenicity	Ultraviolet light, mitomycin C and nitrous acid induce genetic instability in Streptomyces ambofaciens ATCC23877.	Volff JN, Vandewiele D, Simonet JM, Decaris B	Mutat Res	10.1016/0027-5107(93)90008-4	1993	*
	An aminoacylase activity from Streptomyces ambofaciens catalyzes the acylation of lysine on alpha-position and peptides on N-terminal position.	Dettori L, Ferrari F, Framboisier X, Paris C, Guiavarc'h Y, Hotel L, Aymes A, Leblond P, Humeau C, Kapel R, Chevalot I, Aigle B, Delaunay S	Eng Life Sci	10.1002/elsc.201700173	2018	*
	Multiple and Variable NHEJ-Like Genes Are Involved in Resistance to DNA Damage in Streptomyces ambofaciens.	Hoff G, Bertrand C, Zhang L, Piotrowski E, Chipot L, Bontemps C, Confalonieri F, McGovern S, Lecointe F, Thibessard A, Leblond P	Front Microbiol	10.3389/fmicb.2016.01901	2016	*

References

#9237

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40053

#18474

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84084

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389373.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces ambofaciens ATCC 23877 ATCC 23877

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